Phaeobacter inhibens 2.10: PGA2_c14260
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Entry
PGA2_c14260 CDS
T02193
Symbol
ligA
Name
(GenBank) DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgl
Phaeobacter inhibens 2.10
Pathway
pgl03030
DNA replication
pgl03410
Base excision repair
pgl03420
Nucleotide excision repair
pgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGA2_c14260 (ligA)
03410 Base excision repair
PGA2_c14260 (ligA)
03420 Nucleotide excision repair
PGA2_c14260 (ligA)
03430 Mismatch repair
PGA2_c14260 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgl03032
]
PGA2_c14260 (ligA)
03400 DNA repair and recombination proteins [BR:
pgl03400
]
PGA2_c14260 (ligA)
Enzymes [BR:
pgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PGA2_c14260 (ligA)
DNA replication proteins [BR:
pgl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PGA2_c14260 (ligA)
DNA repair and recombination proteins [BR:
pgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PGA2_c14260 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PGA2_c14260 (ligA)
MMR (mismatch excision repair)
DNA ligase
PGA2_c14260 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PGA2_c14260 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
PTCB-BRCT
DUF7340
Motif
Other DBs
NCBI-ProteinID:
AFO87430
LinkDB
All DBs
Position
1572003..1574261
Genome browser
AA seq
752 aa
AA seq
DB search
MTQSGNNNLKSLTSDEARARFLLLQDELRVADLAYHQADDPEISDADYDAKKREYRALAE
HFPELADGATALETVGAPVASGFGKITHAQRMMSLGNAFDDEDVRDFDKGLRKYLGLGAS
DPLAYTAEPKIDGLSLSLRYENGKLIHAATRGDGAVGENVTENARTIADIPQEIAAAPAV
LEVRGEVYMSHEDFAALNDRHAAQGGKTFANPRNAAAGSLRQLNAEITRSRPLRFFAYSW
GELSEPLAETQFEALARLREMGFQTNPLTKHCSTTDALIAQYRLIEAQRATLGYDIDGVV
YKVDALALQARLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGALSPVARLQPVTV
GGVVVSNATLHNEDYIAGLDSKGEEIRDGKDIRIGDWVQVYRAGDVIPKIADVDLSKRPE
DAVPFAFPAACPECGSDAVREEGDAVRRCTGGLICPAQAVEKLKHFVSRKAFDIDGLGAK
QIEAFYGDAVLAIKTPADIFTLQARDAKTLAKLKNRDGWGETSAANLFAAIEEKRRIELA
RLIFGLGIRHVGEVGARDLALHYADWDAMAAAVDTARPAALAQRAADEAEDRERVAAAQE
NRRARIKEARDRAVATLNVPSEARAAWDDLTGIDGIGATLGVSLSDAFANTEERAAFDAL
RGHLDIIPPEAPQNDSPVTGLTVVFTGTLEKMTRAEAKARAEGLGAKVAGSVSKKTDILV
AGPGAGSKEQKARDLGVRILDEDGWLELIAGA
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
gtgacacagtcaggcaataacaatcttaagagtttgaccagcgacgaagcccgcgcccgt
ttcctgttgctgcaggacgagctgcgcgtcgccgatcttgcctatcatcaggcggatgat
ccggagatcagcgacgccgactatgatgccaaaaaacgtgaatatcgcgcgcttgccgag
cattttccggaactggccgatggggcaaccgcacttgagacggtcggtgcgccggtggcc
tccggctttggcaagatcacccatgcgcagcggatgatgtcactgggcaacgcgtttgac
gatgaggatgtgcgcgactttgacaaggggctacgcaaatacctgggcctcggcgcatca
gatccgctcgcctatacggcagagccgaaaatcgacgggttgtcgctgtcgctgcgctat
gagaacggcaagctgatccatgccgccacccgcggggatggcgcggtgggcgagaatgtc
actgaaaatgcccgcacaattgctgatatcccgcaagagatcgctgctgcaccggcggtg
ctggaggtgcggggcgaagtctatatgagccatgaggatttcgcggcgctgaacgatcgt
cacgctgcgcaggggggcaagacatttgccaatccgcgcaatgcggcggcgggatcgttg
cgccagctgaatgcggagatcacccggtcgcggccgctgcgcttttttgcctatagctgg
ggcgagctgtcggaacctttggcagagacacagtttgaggcgctcgcgcggctacgggag
atgggatttcagaccaacccgctgaccaaacattgcagcacgacagacgcgctgatcgcg
cagtaccgcctgatcgaggcgcagcgcgcgacgctgggctatgatattgacggcgtggtc
tacaaggtcgatgccctggcgttgcaggcgcgtctcggcttccgctcaaccacgccgcga
tgggcgattgcgcataaattccctgcggaattggcctggacgcggctggagggcatcgac
attcaggtgggacgtaccggcgcactcagcccggtggcccggttgcagccggtcaccgtg
ggcggcgtcgttgtctccaacgcgacattgcacaatgaggactatattgccgggctggat
tccaagggtgaagagatccgcgacggcaaggatatccggatcggcgactgggtgcaggtc
tatcgtgcgggggatgtgatccccaagattgccgatgtggatctgtccaaacgccccgag
gacgcggtgccttttgccttccctgcggcgtgtccggaatgcgggagtgatgcggtccgc
gaggagggggatgcggtgcgtcgatgtacgggtggtctgatctgccctgcacaagcggtt
gaaaaactgaagcatttcgtctcgcgcaaagcctttgatattgacggtctgggtgcgaag
cagatcgaagccttctatggtgacgcggtgctggcgatcaaaacgcctgctgatatcttc
acccttcaggcgcgtgatgcaaagaccctcgccaagttgaaaaaccgcgacggctggggc
gagacctcggctgcgaatctgtttgccgcgattgaggaaaagcgccggattgagctggct
cggctgatcttcggccttgggattcgtcatgtgggcgaggtcggcgcgcgcgatctggcg
ctgcattatgctgattgggacgcgatggctgcggcggtggatacggcccgtccggcggcg
cttgcgcaacgggccgcggatgaggcggaggaccgcgaacgggtcgcggccgcgcaggag
aaccgccgcgcccggatcaaggaggcgcgcgaccgtgccgttgcgacgctgaatgtgccg
tcagaggcccgcgcggcgtgggacgacctgacggggattgacggaattggcgctacgctt
ggggtgtcgctgtccgatgcctttgccaataccgaagaacgggccgcctttgacgccttg
cgcggccatctggacattatcccaccggaggcgccccagaatgacagtccggtgaccggg
ctgacggtggtgtttaccggcacgttggagaagatgacccgagcagaggccaaggcccgc
gccgaaggtctgggtgccaaagtggccggctcggtatcgaagaaaaccgatattctggtc
gcaggccccggtgccggttcaaaggagcagaaagcccgtgatctaggggtgcggattctg
gatgaggacggctggctggagctgattgcaggcgcatga
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