Pseudobacter ginsenosidimutans: FSB84_08065
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Entry
FSB84_08065 CDS
T06126
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgo
Pseudobacter ginsenosidimutans
Pathway
pgo03030
DNA replication
pgo03410
Base excision repair
pgo03420
Nucleotide excision repair
pgo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FSB84_08065 (ligA)
03410 Base excision repair
FSB84_08065 (ligA)
03420 Nucleotide excision repair
FSB84_08065 (ligA)
03430 Mismatch repair
FSB84_08065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgo03032
]
FSB84_08065 (ligA)
03400 DNA repair and recombination proteins [BR:
pgo03400
]
FSB84_08065 (ligA)
Enzymes [BR:
pgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FSB84_08065 (ligA)
DNA replication proteins [BR:
pgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FSB84_08065 (ligA)
DNA repair and recombination proteins [BR:
pgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FSB84_08065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FSB84_08065 (ligA)
MMR (mismatch excision repair)
DNA ligase
FSB84_08065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FSB84_08065 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QEC41651
LinkDB
All DBs
Position
complement(1959339..1961438)
Genome browser
AA seq
699 aa
AA seq
DB search
MYSPDQTKALQQLTESLLKKDDKHPVTTKEIDNLRDVLKFHEHRYYILNDPLVADQEYDK
LFKSLEKLEQAHPELITSDSPTQRVSKGLTKDFPPAPHLVPMLSLDNSYNEEDLRDWDRR
VRELAKSENIEYCIEPKFDGASISLIYENDLLQRGATRGNGVAGDDITTNIKQIRSVPLS
AKFSDYGIQQIEIRGEVLINKNNFKKYNEQLIEQNLPPLANPRNAAAGTLRIKDPKEVGK
RNLEAFLYHVSYYTTLPGKTLDESLHTHSGNLNMLWNLGFRSPMKEKKVFKGIEDVIAYC
REYEAHRDDLPYEIDGMVIKVNSIDMQDQLGMTTHHPRWAIAFKFKARQATSKLRSVEYQ
VGRTGSITPVAKIDPVAIGGVTVSSVSLHNEDVIREKDIMLGDTVLVERAGDVIPYIVKP
LAELRTGSEKRIEFPTNCPVCGDPLVKPVDEAVWRCNNINCEAQVVERIIHFTSKDAMDI
RGLGDAIIRKFYELKFLHDVPGIYELPFAQISAREGFGEKSISNLQAAIEASRAQPLHRL
IYALGIRHVGETTAKTLANAVKYLPEMADLSMEDLQALEDIGPKVAGSVYQFFHNWDNLE
MLKKLESLGLQLKNDRSNLTAEGNLTGLTFLFTGTLPTLKRSEAEEMVETNGGKILGSVS
SKLSYLVVGEDAGSKLEKAKKIATVKIITEAEFLQMVNR
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtactccccagatcaaacaaaagcattgcagcagttgacagagagcctgctgaagaag
gacgacaagcatcctgtgaccaccaaagagatcgacaatctccgtgatgttctaaagttc
catgagcaccggtactatattttgaatgacccgctggtggcagaccaggaatacgataag
cttttcaaatcgctggaaaaactggaacaggcgcatccggagctgatcacttcagattct
cccacacaacgcgtgagcaagggcctcaccaaagacttcccgcctgcaccgcacctggtg
ccgatgctttccctggacaattcatataatgaagaagacctgcgcgactgggatcgccgc
gtacgcgaactggccaaatcggagaacattgaatactgtatcgagccaaagttcgacggg
gccagcatttcactgatctacgagaatgatctgctgcaacgcggcgccacccgtggcaat
ggcgttgctggtgacgacatcactaccaatatcaaacagatccgctctgtgccgctctcc
gcaaagttttcggattacggtatccagcagatcgagatcaggggtgaagtgctgatcaat
aagaacaatttcaaaaaatacaatgaacaactgatagagcagaacctgccgccactggcc
aatccccgcaacgcggctgccggtacacttcgcatcaaagacccgaaggaagtaggtaaa
cgaaatctcgaagccttcctctaccacgtcagctattacactacgctgcctggtaaaacg
ctcgatgaatctttgcacactcatagcggcaacctcaatatgctgtggaacctgggtttc
cgcagtcccatgaaagagaaaaaagtatttaaggggatcgaagatgtgatagcatattgc
cgcgagtatgaggctcaccgtgatgatctcccttatgagatcgatggaatggtgatcaaa
gtgaacagtatcgatatgcaggaccagctgggtatgaccacgcaccacccgcgctgggcc
atcgccttcaaattcaaagcgcgccaggctaccagcaagctgcgttccgttgaataccag
gtaggccgcaccggcagtatcacgcctgtggccaagatcgatcccgtagcaattggtggt
gttaccgttagttccgtgtctttgcacaatgaagatgtgatccgtgagaaagacatcatg
ctgggagatactgtgctggtggaaagggccggagatgtgatcccttatatcgtgaaacct
ctggcagaactgagaacgggatcggaaaagaggatcgagttccctaccaattgccccgta
tgcggggacccgttagtaaagcccgtggatgaagctgtatggcgctgcaacaatattaac
tgtgaggcacaagtggtggaacgcatcattcacttcaccagtaaggatgccatggatatc
aggggacttggagatgccattatccgtaaattctatgaactgaaattcctgcacgatgtt
cccggcatttatgaactgccatttgctcaaatcagcgccagggaagggtttggcgagaag
agtatctccaatttacaagccgctatcgaggcctccagggcacagccattgcatcgtctg
atctatgcactgggtatccggcatgtgggggaaacaacggcaaaaacacttgctaacgcc
gtcaaatacctgccggagatggcggacctctcaatggaagacctccaggctttggaagat
attggtccgaaagtggccggaagcgtgtaccagtttttccacaattgggacaatttggaa
atgctgaaaaagctcgaaagtctcggattgcaattgaaaaatgacaggagcaatctaacg
gcggagggcaacctgacgggactaacgttcttgttcacgggaaccttgccaacgctgaaa
cgcagtgaggctgaggagatggtggaaactaacggtggtaagatactggggtccgttagc
tccaagctcagttacctggtagtgggggaagacgcaggatccaagctggaaaaggccaaa
aagatagcaactgttaagattatcacagaggcggaattcctgcaaatggttaaccgctga
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integrated database retrieval system
