Parabacteroides goldsteinii: K6V26_10120
Help
Entry
K6V26_10120 CDS
T07780
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgol
Parabacteroides goldsteinii
Pathway
pgol03030
DNA replication
pgol03410
Base excision repair
pgol03420
Nucleotide excision repair
pgol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K6V26_10120 (ligA)
03410 Base excision repair
K6V26_10120 (ligA)
03420 Nucleotide excision repair
K6V26_10120 (ligA)
03430 Mismatch repair
K6V26_10120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgol03032
]
K6V26_10120 (ligA)
03400 DNA repair and recombination proteins [BR:
pgol03400
]
K6V26_10120 (ligA)
Enzymes [BR:
pgol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K6V26_10120 (ligA)
DNA replication proteins [BR:
pgol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K6V26_10120 (ligA)
DNA repair and recombination proteins [BR:
pgol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K6V26_10120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K6V26_10120 (ligA)
MMR (mismatch excision repair)
DNA ligase
K6V26_10120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K6V26_10120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
Auto_anti-p27
RNA_ligase
PTCB-BRCT
BRCT_2
HHH
EAD10
zf-tcix
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
UBD76636
LinkDB
All DBs
Position
complement(2201623..2203617)
Genome browser
AA seq
664 aa
AA seq
DB search
MEAKIKALRDELEQHNYNYYVLSTPTISDREFDEKMKELQALEEAHPEFADPHSPTQRVG
SDLSKEFEQVVHQYPMLSLGNTYSEEEIRDFYERTERALNEPFEIVAELKYDGTSISLIY
ENGRLVRAVTRGDGTRGDDVTANVKTIRSVPLKLRGDNYPENFEIRGEILLPWAEFDRLN
KEREEQEEPLFANPRNAASGTLKQQNPAIVASRKLDAYFYYLLGEGLPADAHYENLQIAR
TWGFKIPDVIRKCDSLQDIFDYIAYWDVERKNLPVATDGIVLKVNSLRQQKNLGFTAKSP
RWAIAYKFQAERAVTRLNSVSFQVGRTGAVTPVANLEPVLLAGTTVKRASLHNADIIEGL
DLHLGDNVYVEKGGEIIPKIVGVDVDSRSMLLGAKVTFIKTCPECGTPLYRPEGEAAHYC
PNEAGCPPQIKGRIEHFVTRRAMNINIGPETVEDLYEAGLVKNVADLYTLEMPDLLRLER
WAEKSARNLMASLEESKQVPFERVLFGLGIRYVGETVAKRLASAFHSMQQLQEASLEALT
EVDEIGERIARSVVDYFADENNRILVARLQEYGLQMMVAEEVLANRSDKLKGLTIVISGT
FTQHSRDEYKAMIEQHGGKNSGSVSGKTDYILAGENMGPAKLEKAAKLGVKIINETEFLN
MLAE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaaagataaaagcactgcgtgatgagttggaacagcataattataattattat
gtactttccacaccgacgatatcagaccgtgagtttgatgagaagatgaaagaattacag
gcattggaggaagctcatcctgaatttgccgatccgcattcaccgacgcagcgggtggga
agcgacttgtcgaaggaatttgaacaggtagtccaccagtatccgatgctttctttggga
aatacctattccgaagaagaaatacgtgatttctatgagcggacggaacgtgctttgaac
gagcctttcgagattgttgccgaactgaaatatgacggaacttccatctcgttgatttat
gagaacggacgcctggtccgtgccgtgacccgtggcgacggaacccgtggcgatgatgtg
acggctaatgtaaagacaatccgttctgtcccgttgaagctacggggtgataactatccg
gaaaactttgagatacggggtgaaattctattgccctgggcagaattcgaccgtctgaac
aaggaacgtgaagagcaggaagaaccgcttttcgccaatcctcgtaatgctgcttcaggc
acattgaaacaacagaatccagctatcgtggcttcacgtaaactggatgcttatttttat
tatttactgggtgaaggtcttcctgccgacgctcattacgaaaatttacagattgctcgt
acctggggatttaaaatacctgatgtcatccgtaaatgcgacagcttgcaggatattttc
gactatatcgcttactgggatgtggaacggaagaacttgccggtggctactgatggcatc
gtattgaaagtaaattcactgcgccagcagaagaatctgggattcactgccaagagtccc
cgttgggctattgcttataaatttcaggcagagcgggcggtaacacgtctcaactcagtc
tctttccaggtaggacgcacaggggccgttactccggttgccaacctggaaccggtattg
ctggccgggacgaccgtcaagcgtgcctctctgcataacgcagatattattgaagggctg
gatttgcatctgggagataatgtatatgtagaaaaaggcggagagatcattcctaagatt
gttggtgtcgatgtcgattcccgttcgatgttgttgggtgcgaaggttacttttatcaag
acttgccctgaatgcggtacgcctttgtatcgtccggaaggggaggcggcccattattgt
ccgaatgaagccggttgtccgccgcagattaaaggtcgtatcgaacatttcgttacccgc
cgcgccatgaatataaatatcggtccggaaacggtagaagatttgtatgaagccggactg
gtaaaaaacgttgccgatctgtacaccttggagatgccggatttgttgcgtctggaacgt
tgggcggagaaaagtgcccgcaacctgatggcgagccttgaagaatccaaacaggtaccg
tttgaacgggtgttgtttggattgggtatccgttatgtcggcgagactgtggcaaagcgc
ctggcatctgcattccattcgatgcaacaattacaggaggcttccttggaggcgttgacg
gaagtggatgagattggcgaacgtattgcccgtagtgtcgtagactattttgccgacgaa
aacaaccgtatcctggtagcccgcctgcaagaatacggattgcaaatgatggtagccgaa
gaagtgctggcaaaccgttccgataaactgaaaggattgacaatcgtgattagcggtaca
tttacccaacattcacgtgacgaatataaagccatgatcgaacagcatggcggaaagaac
agtggttccgtctccggcaaaacggattatatccttgccggggaaaacatgggtccggcc
aaacttgaaaaagcagcaaagctgggagtgaagattataaatgaaactgaattcttaaac
atgttggcagaatga
DBGET
integrated database retrieval system
