Paraburkholderia graminis: CUJ91_10285
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Entry
CUJ91_10285 CDS
T05548
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgp
Paraburkholderia graminis
Pathway
pgp03030
DNA replication
pgp03410
Base excision repair
pgp03420
Nucleotide excision repair
pgp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CUJ91_10285 (ligA)
03410 Base excision repair
CUJ91_10285 (ligA)
03420 Nucleotide excision repair
CUJ91_10285 (ligA)
03430 Mismatch repair
CUJ91_10285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgp03032
]
CUJ91_10285 (ligA)
03400 DNA repair and recombination proteins [BR:
pgp03400
]
CUJ91_10285 (ligA)
Enzymes [BR:
pgp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CUJ91_10285 (ligA)
DNA replication proteins [BR:
pgp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CUJ91_10285 (ligA)
DNA repair and recombination proteins [BR:
pgp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CUJ91_10285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CUJ91_10285 (ligA)
MMR (mismatch excision repair)
DNA ligase
CUJ91_10285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CUJ91_10285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AXF08271
LinkDB
All DBs
Position
PHS1_A:complement(2325067..2327148)
Genome browser
AA seq
693 aa
AA seq
DB search
MARTPASHSATSAPAERDPAARAEWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESI
EAEHPDLIVPDSPTQRVGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNN
AKEPPVPVDYATELKFDGLAISLRYVDGVFVQAATRGDGATGENVTENIRTVRSIPLRLK
GKRVPHILDVRGEVLMFKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPL
SFFAYGIGVLDGIEMPATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFHAVGEKRDKL
PYDIDGVVYKVNRRDEQEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPV
ARLEPVFVGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALIDRRPDDAR
EFVMPTHCPVCGSNIERLPDEAIARCTGGLFCPAQRKQALWHFAQRRALDIDGLGEKIID
QLVEQNLVRTPADLFNLGFSTLAQLDRFADKSAQNLLDSLEKARHTTLSRFIYALGIRHV
GESTAKDLAKHFGSLDPIMEASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAHG
KVTWPEGPPAPKAPQGVLAGKTIVLTGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYVV
AGAEAGSKLVKAEELGIPVLDEDGMRKLLEGQS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaactcccgcctcacattcagccacgagcgctccggccgagcgcgatccggct
gcacgcgccgagtggctgcgcgcggaactcgaacgcgccaactacgcgtactacgtgctc
gaccagcctgatctgcccgacgccgaatacgacaagctgttcaaggagctcgaaagcatc
gaggcggagcacccggatctgatcgtgccggattcgcccacccagcgcgtgggcggcgaa
gcggcgagcggcttcgagccggtcgttcacgaccagcccatgctgtcgctgaacaacggt
ttcgccgacgaagacatcatcgcgttcgacaagcgcgtcggcgacgcgctcggcaacaat
gcgaaagagccgccggtgcccgtcgactacgcaacggagctcaagttcgacggcctggcc
atctcgctacgttacgtcgacggcgtgttcgtgcaggccgcgactcgcggcgacggtgcg
acgggcgagaacgtcaccgaaaacatccgcacggtccgttcgattccgctcaggctcaaa
ggcaagcgcgtgccgcacatactcgacgtgcgcggcgaagtgctgatgttcaagcgtgac
ttcgaacgtctgaacgagcgtcagcgcgcggcgggacacaaggagttcgccaatccgcgc
aatgcagccgcaggcagcttgcgtcagctcgatccgaagatcaccgcgcagcggccgctg
tcgttctttgcctatggcatcggcgtgctcgacggcatcgagatgccggccacgcacagc
gaactgctcgactggtacaaggagcttggcctgccggtcaattcggagcgcgcggtcgtg
aagggcgccgaaggtttgctcgcgttttttcacgcggtgggcgagaagcgcgacaagctg
ccgtacgacatcgacggcgtggtctacaaggtcaaccggcgcgacgagcaggaagcgctg
ggctttgtatcgcgtgcgccgcgttttgcgctcgcgcataaattcccagcacaggaggcg
cttacgaagctcgtcgcgatcgacgtgcaggtcgggcgcaccggcgcaatcacgcccgtt
gcgcggctcgagccggtgttcgtcggcggagccacggtgaccaatgcgacactgcataac
gaagacgaagtgcgccgcaaggacatccgcatcggcgacacggtgatcgtgcggcgtgcc
ggcgacgtgattcccgaagtggtgagcgcgctcatcgaccgtcgtccggatgacgctcgc
gaattcgtgatgccgacgcattgcccggtgtgcggctccaacatcgaacggctgccggac
gaggcgattgcgcgctgcacgggcggccttttttgtccggcgcagcgcaagcaggcgctg
tggcatttcgcgcagcggcgcgcgttggacatcgacggattgggcgaaaaaattatcgat
caactcgtcgaacagaacctggtgcgcacgcccgccgatctgttcaacctcggcttctcg
acgctcgcgcaactcgaccgtttcgccgacaagtccgcgcagaacctgctcgactcgctc
gagaaggcgaggcacaccacgctctcgcgtttcatctacgcactggggattcggcatgtc
ggcgaatccacggcaaaggatctggcgaagcacttcggctcgctggacccgatcatggag
gcttcggtggaggcgctgctcgaagtcaacgacgtcgggccggttgtcgccgaatccatt
caccagtttttcgccgaagagcacaaccgcacggtgatcgagcaactgcgcgcgcacggc
aaggtcacatggcccgagggcccgcccgcgccgaaggcgccgcaaggcgtgctggccggc
aagaccattgtgctgaccggcacgttgccgagccttgcccgcgaagaagcgaaggaaatg
ctggaagcggccggcgcgaaagtggccggctcggtgtcgaagaaaacagactatgtggtg
gcaggggccgaagctggcagcaagttggtgaaggccgaggaactcggcattcccgtactc
gacgaagatggtatgcgtaagctcctggaggggcagtcatga
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