Porphyromonas gingivalis TDC60: PGTDC60_1225
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Entry
PGTDC60_1225 CDS
T01516
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pgt
Porphyromonas gingivalis TDC60
Pathway
pgt03030
DNA replication
pgt03410
Base excision repair
pgt03420
Nucleotide excision repair
pgt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PGTDC60_1225 (ligA)
03410 Base excision repair
PGTDC60_1225 (ligA)
03420 Nucleotide excision repair
PGTDC60_1225 (ligA)
03430 Mismatch repair
PGTDC60_1225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgt03032
]
PGTDC60_1225 (ligA)
03400 DNA repair and recombination proteins [BR:
pgt03400
]
PGTDC60_1225 (ligA)
Enzymes [BR:
pgt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PGTDC60_1225 (ligA)
DNA replication proteins [BR:
pgt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PGTDC60_1225 (ligA)
DNA repair and recombination proteins [BR:
pgt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PGTDC60_1225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PGTDC60_1225 (ligA)
MMR (mismatch excision repair)
DNA ligase
PGTDC60_1225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PGTDC60_1225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Auto_anti-p27
HHH
PTCB-BRCT
BRCT_2
AraC_N
Motif
Other DBs
NCBI-ProteinID:
BAK25380
LinkDB
All DBs
Position
complement(1261970..1263979)
Genome browser
AA seq
669 aa
AA seq
DB search
MEKIVPPAVRIEELRRILREHEYRYYVLSSPTIDDFEYDAMMKQLEELEREYPEWDSPDS
PTHRVGSDKTEGFASVRHDRPMLSLSNTYNYDEIGDFYRRVSEGLQGAPFEIVAELKFDG
LSISLIYEVGMLVRAVTRGDGIMGDDVTANVRTIRSVPLRLRGDDYPRMLEVRGEILLPF
KEFDRINAQREAEGEPLFANPRNAASGTIKQLDPHIVAGRNLDAYFYYLYSDEPLAENHY
DRLMQARQWGFKVSDAVTLCCSKEDVYAFIDRFDTERLTLPVATDGIVLKVNAPAQQDLL
GFTAKSPRWAIAYKYQAERVRTRLQHVSYQVGRTGAVTPVANLDPVLISGTVVRRASLHN
ADFIAEKDLHEGDFVYVEKGGEIIPKIVGVDTDARSIDGRPIVFTVLCPDCATPLVREQG
EAAYYCPNAEGCPQQQKGRLEHYCGRKAADINIGPETIELLYSRNMIRNVADFYALTEEQ
LLTLPGFKKRAAAKLLDSIEASKARPYQAILFGLGIRFVGETVAKKLAAVYPSIDALAAA
TSEELVQIDEIGERIAAAVLHFFSLRQNRELIERLRLAGVSLEAETVSVPVSARLAGKTV
VISGTFEKYSRDEYKAMVEDNGGRMAGSVSSKTSFILAGSDMGPSKREKAEKLGVRLMSE
EEFLRLIEE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagatagttccccctgctgtccgaatagaagagctgcgccgcattctgcgtgag
cacgaatacaggtattacgttctctcatctccgactatcgatgacttcgagtatgacgcc
atgatgaagcagcttgaggagctggaacgggaataccccgaatgggatagtcctgactcg
cctacgcatcgtgtcggaagcgacaaaacggaaggattcgcttccgttcgccacgacaga
ccgatgctttccctcagcaatacatataattacgatgagattggagatttttatcgtcgc
gtgtccgaaggacttcaaggcgcacctttcgaaatcgttgcagagctgaaattcgacgga
ctttccatttcgcttatctacgaagttggtatgctggtgcgtgccgttaccagaggcgat
ggaataatgggagatgatgtaacggctaatgtccgtactatccgatctgtccctttgcga
ctaagaggcgatgattatccccgtatgttggaagttcgtggagagatattgctcccgttc
aaggaattcgatcggatcaatgcccaacgggaggccgaaggggagcctctatttgccaat
ccgcgcaatgccgcttccggtaccattaagcagctcgacccccatatcgtagccggacga
aacttggatgcttatttctactatctatatagtgatgagcctttggcagagaatcattac
gaccgactgatgcaggcgcgtcagtggggtttcaaagtctctgatgccgtcacactgtgc
tgtagtaaggaggatgtatatgcctttatcgatcgtttcgataccgagcgcctgacattg
cccgtagctactgatggtattgtcctcaaggtgaatgctccggctcagcaggatttgctt
ggctttacggccaaaagcccacgttgggctattgcctataagtatcaggccgagcgagta
cgtactcgtctgcagcatgtaagctatcaagtagggcgtacgggggcggtcacacctgtg
gccaatcttgacccagtactgatatccggtacggtcgtgagacgcgccagcctgcataat
gctgattttattgcggagaaagaccttcacgagggagactttgtctatgtggaaaaagga
ggagagatcattcccaagatagtgggcgtggatacggatgcacgcagtatcgatggtaga
cctatagtttttacagtgctctgtccagactgtgctacaccattggtacgcgaacaggga
gaagctgcctattattgcccgaatgccgagggctgcccacagcagcagaaaggacggctc
gaacactattgcggacgcaaggcggcagacatcaatatcggcccggagacgatcgaattg
ctttatagccgcaatatgattcgtaacgttgctgacttttatgcccttacggaagagcag
ctactcactctgcccggcttcaaaaaacgggctgctgccaaacttttggacagtatcgaa
gcctccaaagcccgtccgtatcaggccattttgttcggattaggtattcgctttgtcgga
gaaaccgtagccaagaaacttgctgcggtctatccttctatcgatgccctggctgctgct
acgagcgaggaattagtacagatagacgagatcggggaaagaatagcagctgctgtactt
cattttttcagccttcggcagaacagggagttgatcgaacgacttcgtttggcaggtgta
tcgttggaagctgagacggtttccgtgccggtttctgctcgtttagccggaaaaacggtt
gttatcagtggtacatttgaaaagtatagtcgtgatgagtacaaagctatggtagaggac
aatggcggacgtatggccggatcggtttcgtccaagacctctttcattcttgccggatcg
gatatggggccgagtaagagagagaaagcagagaagctcggtgtgcggctgatgagtgaa
gaggaatttctccgtctgatagaagaatag
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integrated database retrieval system
