Pantherophis guttatus (corn snake): 117672677
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Entry
117672677 CDS
T07329
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pgut
Pantherophis guttatus (corn snake)
Brite
KEGG Orthology (KO) [BR:
pgut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pgut03036
]
117672677 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
pgut03400
]
117672677 (SMCHD1)
Chromosome and associated proteins [BR:
pgut03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
117672677 (SMCHD1)
DNA repair and recombination proteins [BR:
pgut03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117672677 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
117672677
NCBI-ProteinID:
XP_034285437
UniProt:
A0A6P9CQH6
LinkDB
All DBs
Position
Unknown
AA seq
2014 aa
AA seq
DB search
MAEAQGNPDGTILTLFVYDRRRDQSDDAETVLRCPKENYRRFLNDVRWELDISPTETFVI
TTTDRKQITSENFDQIVKDKMTLYLLQRVDQLLTSSTKERIEFLPHYNTLLKSGTYEYYA
SKGQNPLPFALAELIDNSLSATSQNSGVRCIQLKLLFDNSQGKPAIAVIDNGRGMTSKQL
NNWAVYRMSKFIQEDVQSDHSGYVRPQTVEPKPLSLNSDISYFGVGGKQAVFFVGQSVRM
ISKPANSQDVHELVLSKKDFEEKEKNKEPIYCNYIRNRKPSDSSHIVNFDERFLHKLILE
EKDRDSFTAVVITGIQPDHLKYLKNNFDYCIRQLKHIYHYYIHGPKGNITNLPMEEKVFN
NMVIEISLFERGKTPQIVNLREIQDDMQTLYINTAADSFEFKAFVGVDGIVEGIIRYHPF
LYDKETHPIFSSGLKENDGDDDNDNNEDEEEECYIREKTARREKAIFECFWNGRLIPYTT
IADFEWCTLPKKRGNVPIECYNRISGVLFSNDKFEVTTNKLTFMELESKLKDKNTLFKRI
INGQEQRMKTGEFASWLKNCHEKHDKQIKFTKFKEKVIRTDQASKGKLTPWATYEEIEWD
GKIYKAGQLVRSIKRGPVLHGRIEHFYLYGDHDGDVYATGGDVQIALEPQALYNEIKIIP
IGKLDCSVSEAVVEKYIEEEMAQFPDSLSVTWPNGDELLSDDIKCAGFTLGDLQVEILNK
KGEPIQKLPGPSRGGSKIKGSKLLVQFKIVLHCSGKNKELVSLISQHGGNWPYWFKKMEN
IFDLGTYTLKLQVLNESNEDTYAGIRLPSKTFKFHVKEGAPQKFTIGILDPPFRIGHPFS
IPLNVQDEFGHTTQLTENITPKLEASGLRLQYEEIKRRPNCVISGIIAKGLVNNYQGKNF
NLKLTLPGLMEESQVLKIKLLPGLPRQLSVKPDEDILTVENGTAFSFHVEVLDEEGNRTP
QPKLLVQCKFLEVPGLPVYVVDYSSPDKNILTGPVLHIQNVKEVQRLEARIEIPSCKNVP
PVNKIIQLLPSTRVARLQINFTEGEKVIQIKDEDVINHVAGDVLKNLTLQIYDEGDRKIK
ITPALAQKVKVSWTPKLNSKQLIKGLLPNVKVPTSVKDECCCLLTFSDEHVSLASSFVVR
PVADEPKHIKSEIKGSNIIKMGEKLQGEMEIMITDQHGNRIQSLTSSCMTALKISGNGLD
KSDLKTIWQQSTQTISIKGIKFEPGPPEVKELHVAWHDLSHYRKLSLIAGPPAQLGLLDW
IEPEKAISVINGKQLPKALTIQLCDQWNNPSAEPNVKITLLKHNNIQIFPSNMLYKTDET
GRASVGVLTIHAPKGEYTLQFKTLYIRNVLTSPEIKINVLPDPEKPVCLNIIYDENAIFT
AGNTFPDFTVSVISEDGNNIKNINPGRISMKIKEIGNDENIATFECSEGNIDEDFFCFRN
KTVPEKASKYSIQFMFTIDRISVLNSREFIIDVVPNKPALLKPKTLPDTTAVSNVQEVDR
RTLVKNLTLIVTDEYKNCTGSDLDGKIVAKIESSTEEDIDIPLFQGNKNTVEFPFHKGIA
EIEDLVLAENSPGRNKTQYTLVFEPIIPLKHYLQPYYLSFMFCNDYEIQKEMADFMKQRD
SFSQSIKTYRDWFDAKDQLIAEIKGQVEEAKKKELQLKNELKKHQIDIPQANGLQHIDSL
IKVKQTEQENILKQPRRICTLANYPKSNQDILGKISHLAQVEDDKVAKVISWHLGGDMDC
ILTLTTAAARRIFHETEGTQQVWPLDSIYKKNLPDWNRSLPHLQNERNYFNPIGNPVFAR
NLLIFPEHKENCQIVFETLLGNTIIIDNLEAANHYRKEVVKTTYCPTILTRQGDRIRNNG
KFGGRQNKAPPIENLRGMVFGAPLPPDYNIISVQIDCLQRYRAAFLQVNKVDTDLNEELQ
SFDSSEMQNKKEELAELEQQLELVNLKLGMTSSSQCNKLPPLSEVLDLSVAPSDSKIGRE
LKRPHSSEEWDSSSPMKKRTGNGNYLFPKKEDIN
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcgcaaggaaaccccgacggcacaatcctaacgctcttcgtgtacgaccgg
cgtcgggaccagtcagatgacgccgaaacagtccttcgatgtcctaaggaaaactatagg
agattccttaacgacgtccgctgggaacttgatatttcccccacggaaacttttgttatt
acaacaactgatagaaaacaaataacaagtgaaaattttgatcaaattgttaaagacaag
atgactctctacttactacaaagagttgatcagttactcacttcatcaacaaaggagcgc
attgagtttttgccacattataacacacttctgaaaagtggaacgtatgaatactatgcc
agcaaaggtcaaaatccacttccatttgcacttgcagaattgattgataactccttatca
gctacttctcaaaattctggagttcggtgcatacagttaaaactgttatttgataattcc
caaggaaaaccagctattgctgtgattgataatggaagaggcatgacttctaaacaatta
aacaactgggcggtgtatcgaatgtcaaagtttatacaagaagatgtacaaagtgatcat
tcaggatatgtacgtcctcaaacagtggagcccaaacctctcagcttaaacagtgatatt
tcatattttggggttggtggtaaacaagctgtgttttttgttggacagtctgttagaatg
ataagcaaacctgcaaattctcaagatgttcacgaacttgtcctttcaaaaaaagatttt
gaagagaaagaaaaaaacaaagaacctatatattgtaactatataagaaatagaaagcca
tctgattcttcccacattgttaatttcgatgagcgatttctgcacaagcttattttggaa
gagaaagacagagacagttttactgctgttgtcattactggaattcagcctgaccattta
aaatacctgaaaaataattttgattattgcataagacagttaaaacacatatatcattac
tatatccatggaccaaaaggaaacataactaatttgccaatggaagaaaaagttttcaat
aatatggttattgagatttcactgtttgaaagggggaaaacacctcagattgtgaacctt
agagaaatccaggatgatatgcagactttatatataaacacagcagcagatagctttgag
tttaaggcttttgttggagtagatgggatagtggaaggaattatacgttaccatcctttc
ttatatgacaaagaaacccatcctatcttttcttcaggattgaaagagaatgatggtgat
gatgataatgataataatgaagatgaagaagaggaatgttatataagagaaaaaacagcc
agaagggaaaaagctatttttgaatgtttttggaatggaagattaatcccatatacaact
atagcagattttgaatggtgtactttgcctaaaaagagagggaacgttccaattgaatgt
tacaaccgaatatctggtgtattattttcaaatgacaagtttgaagtcaccacaaacaaa
ctaactttcatggagttggaatcaaagttaaaagataaaaatacactttttaaaagaatt
attaatggacaggaacagagaatgaaaactggagaatttgcatcatggctcaagaattgc
catgaaaagcatgataaacaaatcaaatttaccaagtttaaagaaaaagtcatacgtact
gatcaggcttctaaaggaaaactgacaccttgggctacatatgaggaaattgaatgggat
ggaaaaatatataaagctgggcagttggtgagatcaattaaaagaggtccagtacttcat
ggcagaattgaacatttttatctatatggagatcatgatggagatgtctatgctactggt
ggagatgttcaaatagctttggagcctcaagcattatacaatgaaataaagatcattcca
ataggcaaacttgattgttcggtgtctgaagcagtagtggaaaaatacattgaagaggaa
atggctcaatttcctgatagtctgtcagtaacatggcctaatggagatgaattattatca
gatgacattaagtgcgcaggatttacattaggagatttacaagttgaaatactgaataaa
aaaggcgagcctattcaaaaacttccaggaccaagtcgtggaggatcaaagatcaaagga
tcaaagttacttgtgcaatttaagattgttttgcattgttctggtaaaaataaggaactc
gtttctcttatcagtcaacatggagggaactggccttactggttcaaaaaaatggaaaat
atttttgaccttggaacctacacactaaaactgcaagtgttgaatgaaagtaatgaagat
acttatgcaggaatccgtcttccatccaaaacatttaaatttcatgtaaaagaaggcgca
cctcagaagtttacaataggaattttggatcctccatttcggataggacatccattcagt
attcctctaaatgtccaggatgaatttggacataccactcaactgacggaaaatattaca
ccaaaacttgaagcaagtggtctacgattacagtatgaagaaataaaaagaaggccaaat
tgtgtaatttcaggcataattgctaaaggccttgtaaataattaccaaggcaagaacttt
aatctaaaactcactcttcctggcctaatggaagaatcccaagttttgaaaattaaactt
ctcccaggccttcctcggcaactaagtgtgaaaccagatgaggatatcttaacagttgag
aatggaacagctttctcttttcatgttgaggtattggatgaagaaggcaacagaacacct
caaccaaaactacttgttcagtgcaagtttttagaagttccaggccttcctgtatatgtt
gtagattacagcagtcctgacaaaaatatattaactggaccagttctgcacattcaaaat
gtaaaggaagttcaaagacttgaagcaagaattgaaataccaagttgtaaaaatgtgcca
ccggttaacaagattattcaactgcttcctagtacgcgtgttgcaagactgcagattaat
ttcactgaaggagaaaaagttattcagattaaagatgaggatgtaattaaccatgttgca
ggtgatgtgctaaaaaatcttactctccaaatttatgacgagggagacagaaaaatcaaa
ataactccagctctagctcaaaaagttaaagtaagctggactccaaagcttaatagcaaa
caactgatcaaaggattgttacctaatgtgaaagttccaacatctgtaaaagatgaatgc
tgttgtctgcttacgtttagtgatgaacacgtgtctttggcaagttcatttgtggtcaga
ccggttgctgatgagccaaaacatatcaaaagtgaaattaaaggatcaaatataataaaa
atgggtgaaaagctgcaaggtgaaatggagataatgattaccgatcagcatggaaatcgg
attcagtccctgacatcatcttgtatgactgccttgaagatttctgggaatgggctggat
aaatcagatttgaaaactatttggcagcaaagtacacaaactatttctatcaaaggaatt
aagtttgaaccaggcccaccagaagttaaagaactgcacgttgcttggcatgatttgtcc
cattaccggaagttaagtttgattgctggccctcctgctcaattgggtcttctggattgg
atagaaccagagaaggctatatctgtaattaatggcaaacaattaccaaaggctcttaca
atccagctctgtgatcagtggaataatccatctgctgaacctaatgtcaaaatcacactt
ttaaaacataataatatacagatttttccttcaaatatgctgtataaaacagatgaaact
ggtagagcaagcgttggagttcttactattcatgctcctaaaggagagtacaccttgcag
ttcaagaccttgtatatcaggaatgtactaaccagtccagagatcaagataaatgttttg
cctgacccagagaaacctgtatgtttaaatattatatatgatgagaatgctatcttcact
gctggaaacacttttcctgatttcacggttagtgttatttctgaagatggcaacaatatt
aaaaatataaatccaggaaggatttctatgaaaatcaaggaaataggcaatgatgaaaat
attgcaacatttgagtgttccgaagggaacatagatgaggactttttttgcttcaggaat
aaaacggttccagaaaaagcaagcaaatacagcatccaatttatgtttacaattgacaga
ataagtgttcttaacagtagagagtttataattgatgtggtgccaaacaaaccagcattg
ttgaagccaaaaactttgccagataccactgctgtttctaatgttcaggaggttgacaga
cggacccttgtcaagaacttgactctcattgtaacggatgaatacaaaaactgtacagga
agtgatttagatgggaaaattgtagcaaaaatcgaaagttcaactgaggaagacattgat
attcccctgtttcagggtaataaaaatacagttgaatttccttttcacaaaggaattgct
gaaattgaggatcttgtgctagcagaaaatagtccaggaagaaataaaactcagtatact
cttgtatttgagccaatcatacctttgaaacattatttgcaaccttattatttatccttc
atgttttgtaatgattatgagattcaaaaggagatggcagattttatgaaacagagagac
tccttttcacagtcaataaagacatatagagattggtttgatgctaaggatcagcttatt
gctgaaataaaaggccaagtagaggaagctaaaaaaaaggagttacagctcaagaatgaa
ctgaaaaaacatcagattgacatacctcaggccaatgggctgcagcatattgattcctta
ataaaagttaagcagacagagcaagaaaatatattgaaacaacctagaagaatatgcaca
cttgccaattatcccaaaagtaaccaggatattttgggcaagatttcacacttagcacaa
gttgaagacgataaagtagcaaaggtcatttcctggcatttgggaggtgatatggattgc
atactcactttgacaacagctgctgcacgtcgtatctttcatgagactgaaggaacacaa
caagtgtggcctcttgattctatttataaaaagaatcttccagattggaacagatcttta
cctcatttgcaaaatgaaagaaactatttcaatcctattggaaatcctgtatttgctagg
aacttgctaatatttccagagcacaaggagaattgccaaatagtatttgagacactcttg
ggcaatacaattattattgacaatttggaagctgccaatcattacagaaaagaggttgtg
aaaacgacatattgtccaactatattaacaagacagggggacagaattcgcaataatgga
aagtttggaggccgtcagaataaagctcctcctatagagaaccttcgggggatggttttt
ggagcacctctgccaccggattacaatattatctccgtacagatagattgccttcagcgc
taccgtgcagcatttctccaagttaataaagtagacactgaccttaacgaagaactacaa
tcctttgatagttcagaaatgcaaaataagaaagaagagcttgctgaactggaacaacaa
cttgaattagtaaacctgaaattaggtatgacctcatcaagtcaatgcaacaaattacca
cctctttcggaagtacttgatttgtccgtggctccaagcgattccaaaataggaagagaa
ctaaaacgtccacacagttcagaagaatgggattcatcttctcctatgaagaaaagaaca
ggaaacggcaactatttatttccaaaaaaagaagacataaattaa
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integrated database retrieval system
