Pectinophora gossypiella (pink bollworm): 126373621
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Entry
126373621 CDS
T09293
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
pgw
Pectinophora gossypiella (pink bollworm)
Pathway
pgw03018
RNA degradation
pgw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126373621
09123 Folding, sorting and degradation
03018 RNA degradation
126373621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgw03019
]
126373621
03041 Spliceosome [BR:
pgw03041
]
126373621
Messenger RNA biogenesis [BR:
pgw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126373621
mRNA degradation factors
5'-3' decay
Lsm complex
126373621
Spliceosome [BR:
pgw03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
126373621
Complex C
U2 snRNP components
126373621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
DUF150_C
HydF_dimer
Motif
Other DBs
NCBI-GeneID:
126373621
NCBI-ProteinID:
XP_049875779
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All DBs
Position
16:5386840..5387659
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AA seq
102 aa
AA seq
DB search
MADDGENVAVMTVKEPLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETI
TTVEIDEETYEEVYRTTKRNIPMLFVRGDGVILVSPPVRVGM
NT seq
309 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgacggtgaaaatgtggcagtaatgacggtgaaagaacctctggatttgata
aggcttagtttagatgaaagaatatacgtaaaaatgcgtaatgaacgtgagctccggggg
aaattacatgcttatgatcagcatttaaacatggtactcggtgatgcagaagagacaata
acaacagttgaaattgacgaagagacgtatgaggaagtatacagaacaacaaaaagaaac
atccccatgttatttgttcgaggtgatggtgtaattcttgtatctccccctgtgcgtgtt
ggcatgtag
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