Pseudoalteromonas translucida TAC125: PSHAa1083
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Entry
PSHAa1083 CDS
T00282
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pha
Pseudoalteromonas translucida TAC125
Pathway
pha03030
DNA replication
pha03410
Base excision repair
pha03420
Nucleotide excision repair
pha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSHAa1083 (ligA)
03410 Base excision repair
PSHAa1083 (ligA)
03420 Nucleotide excision repair
PSHAa1083 (ligA)
03430 Mismatch repair
PSHAa1083 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pha03032
]
PSHAa1083 (ligA)
03400 DNA repair and recombination proteins [BR:
pha03400
]
PSHAa1083 (ligA)
Enzymes [BR:
pha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSHAa1083 (ligA)
DNA replication proteins [BR:
pha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSHAa1083 (ligA)
DNA repair and recombination proteins [BR:
pha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSHAa1083 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSHAa1083 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSHAa1083 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSHAa1083 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAI86158
UniProt:
Q3IKB8
LinkDB
All DBs
Position
I:1121252..1123273
Genome browser
AA seq
673 aa
AA seq
DB search
MASSISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFMDNA
GFEKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIAEDH
YQQLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKALQER
LGFVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NGDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHVEKVE
GEAVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQ
GHFESLERMGPKSAKNLVTALQDAKATTLAKFLYSLGIREAGEATTQNLANHFLTLENVI
NASIDSLTQVSDVGEIVATHVRSFFAEQHNLDVVNALVEQGINWPELTPPSAQEQPLAGL
VYVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLT
EEDLINLLEQHNG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagcattagtgagcaaataaaccatcttcgtagtacgcttgaacagcacagt
tacaattattatgtacttgatacccccagtattcctgatgctgaatacgaccgtttatta
caacaactcagcgcactagaaactcagcacccagaattaataactgccgactcaccaacc
caaaaagtgggcggtgctgcgctaagtaaatttgagcaagtagcgcaccaagtgcctatg
ttatcgcttgataacgcctttagcgaagatgagtttattgcctttaatcgccgtataaaa
gagcgtttaatgagtaccgaagagcttactttttgttgtgagccaaaactagatggctta
gctgtgtcgattatttatcgtgatggcgtactagtgcaagccgcgacccgaggtgatggg
ttgacgggagaaaatgtaactcaaaacgttaaaacaattcgtaatgtgccacttaaatta
cgaggtagcgattatcctgctgaactagaagtgcgcggcgaagtgtttatggataatgca
ggctttgaaaagtttaacattgaagctgaaaaacgtggtgaaaaagtatttgtaaaccca
cgcaacgccgccgcaggtagcctgcgccagcttgactctaaaattacggctaaacgccca
ctgatgttttatgcctacagcacaggtcttgtagccgacggtagcattgcagaggatcat
tatcagcaattagaaaaattgactgattgggggttaccactttgccctgaaacaaaatta
gtagaaggcccacaagctgcactggcttattatactgacattttaacgcgccgtggcgag
cttaaatatgaaatagatggcgtggtaataaaaataaatcaaaaagccttacaagagcgt
ttaggctttgtagcacgcgctccgcgttgggctattgcttataagttcccggcccaagaa
gaaataaccaaattactcgatgtagagtttcaggtggggcgtacgggagcaattacaccg
gttgcacgcttagagccggtatttgttggtggtgttactgtatcaaacgctaccttgcac
aatggcgatgaaatagcgcgcttaggcgtaaaagtgggcgacacggtaattattcgccgt
gcaggggacgtaattccacaaataacgcaagtagtacttgagcgccgccctgatgatgcc
cgcgatattgagtttccggtaacttgcccaatttgtgactcccatgtagaaaaagtagaa
ggtgaagccgtagcgcgttgtactggtggtttagtgtgcccggcgcaacgtaaacaagcg
attaaacactttgcatcgcgcaaagcactcgatattgacggccttggcgataaaattgtt
gatcaactcgtcgacagagagctgattaaaacccctgcagatttgtttattttaaagcaa
ggacattttgaatcgcttgagcgtatggggccaaagtcggctaaaaatttggttactgcg
cttcaagacgctaaagcaacaactttggctaagtttttatactcattgggtattcgtgaa
gcgggtgaggcaaccacacaaaatttagctaatcatttcttaacccttgaaaacgtaata
aatgccagcattgatagtttaactcaagtaagtgatgtgggcgaaatagtagcaacccat
gtacgtagcttttttgccgaacagcataatttagatgttgtaaatgcgctggtagagcaa
ggtattaattggcctgaacttactccaccttcagcgcaagagcagccattagctggcctt
gtttatgtgcttaccggtaccttaaacacattaaaccgtaatgacgccaaagcacgtttg
caacagttaggtgctaaagtgtcgggtagtgtgtcggctaaaaccgatgcgttagtagca
ggcgaaaaggccggctctaaactaactaaggcacaagacttaggtatagatgtactgaca
gaagaagatttaattaatttattagagcaacataatggctga
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