Phaeobacter sp. G2: N1037_11145
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Entry
N1037_11145 CDS
T10616
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phae Phaeobacter sp. G2
Pathway
phae03030
DNA replication
phae03410
Base excision repair
phae03420
Nucleotide excision repair
phae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N1037_11145 (ligA)
03410 Base excision repair
N1037_11145 (ligA)
03420 Nucleotide excision repair
N1037_11145 (ligA)
03430 Mismatch repair
N1037_11145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phae03032
]
N1037_11145 (ligA)
03400 DNA repair and recombination proteins [BR:
phae03400
]
N1037_11145 (ligA)
Enzymes [BR:
phae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N1037_11145 (ligA)
DNA replication proteins [BR:
phae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N1037_11145 (ligA)
DNA repair and recombination proteins [BR:
phae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N1037_11145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N1037_11145 (ligA)
MMR (mismatch excision repair)
DNA ligase
N1037_11145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N1037_11145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UWS77848
LinkDB
All DBs
Position
2337114..2339372
Genome browser
AA seq
752 aa
AA seq
DB search
MKQIEALDPSGLSQDQAQAEFLELQSQLAAADQAYHQDDAPFLSDAAYDAAKRRYQALAE
AFPDLADSATQLETVGAPVTSGFGKIQHVVPMLSLGNAFEDADVTDFERSIRSYLGLEAT
APLAFTAEPKIDGLSLSLRYEKGVLIQAATRGDGATGENVTANARTIADIPQQLTGAPDV
LEVRGEVYMSHEDFTALNARHGERGGKVFANPRNAAAGSLRQLDAEITRARPLRFFAYSW
GELSAPLGDTQTSAIARLAELGFQTNPLTKTCNTVADLIAQYRLIEEQRATLGYDIDGVV
YKVDALALQDRLGFRSTTPRWAIAHKFPAELAWTWLEAIDIQVGRTGALSPVARLAPVTV
GGVVVSNATLHNEDYIRGRDSKGAVIRGGKDIRIGDWVQIYRAGDVIPKVADVDLTKRPA
EAVEFNFPDCCPECGSEAVREEGDAVRRCTGGIICPAQAIEKLKHFVSRKAFDIEGLGAK
QLEAFYKDVDLPIRTPVDIYTLADRDAGQLAKLKNRPGWGDQSAANLFAAINEKRNIPLG
RMIFALGIRHVGEVAAKDLALHFGSWQELAKAVDQARAAALAHRAADQAEDQEREQASSE
GRRAKIKETREAAVADFQVPQPAQEAWEDLTGIDGIGATVGLSLSDALANSQERAVINDL
VAHLNIAAPAAPSQASPVAGLTVVFTGKLEKMTRDEAKARAESLGAKVSGSVSKKTDILV
AGPGAGSKEKKAQELGIRILDEDGWLAEIAAT
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacagatcgaagcattagatccctcggggctttctcaggaccaagctcaggcggag
tttttggagttgcagagccagctggccgcagctgatcaagcctaccatcaagacgacgcc
ccctttctgagtgatgccgcgtatgacgctgccaaaagacgttatcaggccttggccgag
gcctttccagatctggcagacagcgcaacgcagcttgaaaccgttggtgcgccggttacc
tctggctttggcaaaattcaacatgttgtgccgatgctctcgttgggcaatgcctttgaa
gacgcggatgtcacggattttgagcgcagcattcgcagctatctggggctagaggccact
gcgccgctggcttttacggctgagcccaagattgatgggctatccctgtcgcttcgctat
gaaaaaggcgttttgattcaggccgcgacccggggcgatggcgccacgggggaaaatgtc
accgccaatgcccgcaccattgcggatatcccgcaacagctgaccggcgcgccggatgtg
ctggaggtgcgcggcgaagtctatatgagccatgaggatttcaccgctctgaacgcccgc
cacggggagcgcggcggcaaggtctttgccaatccgcgcaatgcggcggcggggtctttg
cggcagttggacgccgaaataacccgagcgcgacctttgcgtttctttgcctatagttgg
ggcgaactctctgccccgcttggggatacgcaaaccagcgctattgcgcggcttgccgag
cttgggtttcagaccaacccactgaccaagacctgcaatacggttgcagatctgatcgcg
cagtaccgcctgatcgaagaacaacgcgccacactgggctatgacatcgacggggttgtt
tacaaggtggacgcgctggcgctgcaggatcggcttgggtttcgctcaaccaccccgcgg
tgggcaatcgcgcataaattcccggctgagctggcctggacctggctcgaggcaatcgac
attcaggtggggcgcaccggcgcgctcagcccggttgcccgtcttgctccggtcactgtg
ggcggcgttgttgtctccaatgccaccctgcacaatgaggactatatccgggggcgcgat
tccaaaggcgcagtgatccggggcggcaaggatatccgcattggcgattgggtgcagatc
taccgggccggggatgtgatccccaaggtggctgatgtggatcttaccaaacgtccagcg
gaggccgttgaatttaactttcccgactgctgccctgaatgcggatccgaagctgtccga
gaggaaggcgatgcggtcaggcgctgcaccggtgggattatctgtcccgcgcaagccatt
gaaaagctaaaacactttgtctctcgtaaggcctttgatatcgagggcttgggggctaaa
cagctggaggcgttctacaaggatgtagatctgccgatccgcacaccagttgacatctat
acgctggcagaccgggatgcgggccaattggcaaagctgaagaaccggccaggttggggc
gatcaaagtgccgccaatctctttgctgcgatcaatgaaaaacgcaatatcccgcttggg
cggatgatctttgcgcttggcatccgccacgtgggtgaggtagccgccaaggatctggcg
ctgcattttggcagctggcaggagcttgcaaaggcggtggatcaggcccgcgccgctgcg
ctggcccatcgtgcggcggatcaggcagaggatcaggagcgggagcaggccagcagcgaa
ggccgccgcgccaagatcaaggaaacccgcgaggcggcagttgcagattttcaagtgccg
cagccagcgcaggaggcctgggaggatttgacgggcattgatgggatcggcgcaactgtt
ggcctgtctttgtccgacgcgttggccaatagccaggagcgggcggtaatcaatgatttg
gtggcgcatctgaatatcgcagccccggcagcaccatcgcaggccagcccggttgcggga
ctgacagtggtctttaccggcaaactggaaaagatgacccgcgacgaggccaaggcgcgg
gcagaatctctgggggccaaggtctctggctcggtgtcaaagaaaaccgatatcctggtg
gccggcccgggggctggatcaaaggagaaaaaggcgcaggagctaggtattcgtatcttg
gatgaggacggctggttggcggagattgcagccacatga
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