Providencia hangzhouensis: PZ638_01270
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Entry
PZ638_01270 CDS
T09403
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phag
Providencia hangzhouensis
Pathway
phag03030
DNA replication
phag03410
Base excision repair
phag03420
Nucleotide excision repair
phag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PZ638_01270 (ligB)
03410 Base excision repair
PZ638_01270 (ligB)
03420 Nucleotide excision repair
PZ638_01270 (ligB)
03430 Mismatch repair
PZ638_01270 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phag03032
]
PZ638_01270 (ligB)
03400 DNA repair and recombination proteins [BR:
phag03400
]
PZ638_01270 (ligB)
Enzymes [BR:
phag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PZ638_01270 (ligB)
DNA replication proteins [BR:
phag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PZ638_01270 (ligB)
DNA repair and recombination proteins [BR:
phag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PZ638_01270 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PZ638_01270 (ligB)
MMR (mismatch excision repair)
DNA ligase
PZ638_01270 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PZ638_01270 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WNK24537
LinkDB
All DBs
Position
284590..286317
Genome browser
AA seq
575 aa
AA seq
DB search
MIYILYGYWFASVYRLSGLIVGVMVCINVAQATQQIAVNKPCEKQNSKIISQESHRLGKQ
LQLWNQAYRLAGSSSISDEAYDQLFNLWRSLQRCQQLPEELPEVLLPEKSQLTMHPIPHT
GLKKLNELEVYSWIETRKNIWLQPKVDGVAVTLVYKNGKLISMISRGNSVEGIEWRAKAD
FIPAIPKQIKYSGMLVLQGELFWRMNGHIQAKSGGVNARNKIAGWLMRKNEPTALEENIG
IFIWAWPAGDANPKTQLTLLSEIGFPLAEQYSHKIENKIQAKQLREYYYQGQLPFATDGI
VLKNFPAPAASAWQSKQNSWAIAWKYPLRSVLSEVTKLQFNIGRTGRISVVASITPINID
SKTISKVNAGSLSSWEKRDLLVGDKILVSLSGLGSPKIEDVIWRREEREYPETSTLKQFH
SLSCLTYTEVCSQQFVARLTWLGKQLRMRGISEATWRQWVENHNLTRLTTWLSEQWQSDL
SKGKKHQMLVKQLKMAKDQPVSLWLKGLAIPLTKLQVGKVTDIGMLYDPSWVNSLNLTKL
QKKKLANWLAEPEIESILRILSDMKAIQPPIESHQ
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgatttatattttgtatggttattggttcgcgtcagtttatagactaagtgggttaatt
gttggggtaatggtgtgtattaatgttgctcaagcaacgcagcaaattgccgttaataaa
ccgtgtgaaaaacaaaatagtaaaataataagtcaggaaagtcatcggttaggaaaacaa
ttacaactgtggaaccaagcttaccgtttggcgggtagcagttccattagtgatgaagct
tatgaccagctatttaatttatggcgttctttacaacgatgccagcaacttcccgaagaa
ttgccagaagtactattacctgaaaaatcacagctaactatgcatcccattcctcataca
gggttaaagaaactcaatgaattagaagtttatagctggatagaaacacgtaaaaatatc
tggctacaacctaaagttgatggtgtagcagtaacgttggtttataaaaatggcaagctt
atttccatgattagccgaggaaatagtgttgaaggaatcgagtggcgggcaaaagcagat
tttattcctgcgatacccaaacaaatcaaatattcaggcatgttagttcttcaaggcgaa
ttattttggcgtatgaatggacatattcaagctaaaagtgggggagtgaacgctcgtaat
aagattgcggggtggttaatgcgaaaaaatgagccaaccgcccttgaagaaaatattggt
atttttatttgggcatggcctgcgggggatgctaatccaaaaacacagttaacattactt
tctgagataggttttccgcttgctgaacaatatagccataaaattgaaaataagattcaa
gctaagcaactaagggaatactattatcaagggcaattaccatttgctacagatggcata
gtgcttaaaaattttccagcgccagcagcatcagcctggcaatcaaaacaaaatagttgg
gcgattgcatggaaatatccattacgcagtgtgctatcagaggtaactaagcttcagttc
aatataggaaggaccgggagaattagtgttgtagctagcataacccccatcaatattgac
tcgaaaactatttcaaaggtaaatgctggatcattatcatcatgggaaaaacgagattta
cttgttggagataaaatacttgtctctctttcagggctaggaagtccaaagattgaagac
gttatttggcgacgagaggaacgcgaatatccagagacatcaaccttaaaacagtttcac
tcactaagttgtcttacttatactgaagtttgctcacagcagtttgtcgcaagattaacg
tggttaggtaaacaactacgtatgcgaggaataagtgaggctacatggcgccagtgggta
gaaaaccataacctaactcgattaacaacttggttgtcagaacaatggcaaagcgattta
tcgaaaggtaaaaaacaccaaatgttagtaaagcaactgaaaatggcaaaggatcaacct
gtttcgctttggttaaaaggtctcgcaattccactaactaaattacaagtagggaaagtg
actgacataggtatgttgtatgacccatcatgggttaacagtctaaatttgacgaagctg
caaaagaaaaaattagctaattggctagcggaaccagaaattgaatctattttacgtata
ttgtctgacatgaaagcgattcagccaccaatagaaagccatcaatag
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