Providencia hangzhouensis: PZ638_07720
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Entry
PZ638_07720 CDS
T09403
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phag
Providencia hangzhouensis
Pathway
phag03030
DNA replication
phag03410
Base excision repair
phag03420
Nucleotide excision repair
phag03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PZ638_07720 (ligA)
03410 Base excision repair
PZ638_07720 (ligA)
03420 Nucleotide excision repair
PZ638_07720 (ligA)
03430 Mismatch repair
PZ638_07720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phag03032
]
PZ638_07720 (ligA)
03400 DNA repair and recombination proteins [BR:
phag03400
]
PZ638_07720 (ligA)
Enzymes [BR:
phag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PZ638_07720 (ligA)
DNA replication proteins [BR:
phag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PZ638_07720 (ligA)
DNA repair and recombination proteins [BR:
phag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PZ638_07720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PZ638_07720 (ligA)
MMR (mismatch excision repair)
DNA ligase
PZ638_07720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PZ638_07720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
HHH
DZR_2
RNA_ligase
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WNK25756
UniProt:
A0AA96CK40
LinkDB
All DBs
Position
1760951..1762966
Genome browser
AA seq
671 aa
AA seq
DB search
MTTKQEIDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTSDSPTQR
VGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKNHQELTFCCELKLDGLAV
SLLYENGELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQKGF
EALNEQARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTHYD
RLMQFKAWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEELG
FVSRAPRWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHNA
DEIERLGVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHCPVCGSDIERVEGE
AVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLYQLSAGI
LTGLDRMGPKSAQNLVDALNKSKQTTLARFIYALGIREVGEATAANLAAHYTTLEAVMAA
DEESLKTVQDIGHVVAKHVVNFFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIESPFAG
KTVVLTGSMSVLTRDEAKDKLVALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVI
DENELVRLLNI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaacaagaaatagacgaattaaaaaaacagttacgtcatcatgaatatcaa
taccatgtattagatgcccccgaaattccagacgtagaatatgacaagttaatgcaacgt
ctaaaagagatagaggcacagcatcctgaacttgtcacaagtgattcaccgactcaacgt
gttggtgccgcaccattggctgcgtttgataccgtacgccatgaaattcctatgctatcc
ctagataatgtttttgatgaagaaagttaccttgcgtttgataagcgggtaagagatcgt
ttgaaaaatcatcaagaactgactttttgttgtgagctcaagctcgatgggttagcggta
agtttgttgtatgaaaatggtgaattagtacaagcggcgactcgtggtgatgggaccgta
ggtgagaatattaccgcgaatgtacgaaccatacgcgctatcccattgcgtttaagggga
agcaatattcctgatcgcgttgagatccgtggcgaagtcttcatgccccaaaaaggtttt
gaagcactaaatgagcaggcacgtaaaacggatggcaaagtctttgcaaacccgcgtaat
gcggctgcgggttcgttacgtcaattagacccacgtattaccgctaaaaggccactcact
ttttattgttatggtgttgggcttgtggaaggtggctcgttaccggacacacattatgac
cgtttgatgcaatttaaagcatggggtttaccggttagtgattatgttcaattacgtgtt
ggtcatcaggccgtattagatttttaccatgaaattgagcaagttcgacctgaccttggc
tttgatatcgatggggtagtcattaaagttaactcaatcgcgattcaagaagaattaggt
tttgtttctcgagcacctcgctgggcgacagcgtttaaattcccagctcaagaacaagtc
acattattaaaagatgttgaatttcaagttgggcgtacaggtgctatcacgcctgtggcg
cgtttagagcccgtgcaagtcgcaggtgtggtggtcagtaatgcgacgttacacaatgca
gatgaaattgaacgccttggcgtgcatatcggtgatacggtcattattcgtcgagcaggg
gatgttattccacaaatcgtcagtgttgtggttgacaagcgaccaacagatagccgtgaa
attgtcttcccgacccattgccctgtatgcggttctgatatcgaacgagttgaaggtgaa
gcggtggcacgctgcaccggtgggcttatttgtggggcacaacgcaaagaagcactgaaa
cattttgtctcacgccgagcaatggatgtggatggcatgggcgataaaattatcgaccag
ttagtcgaaaaagagtatgtcaaaacgccggcagatttgtaccaattaagtgcaggtatt
ttaactggcctcgatagaatggggccgaagtcggcacagaatctggttgatgcactcaat
aagtctaagcaaacaacattggctcgctttatttatgcccttggaattcgtgaggttggc
gaagcaacggcggcaaacttagcagcgcattacaccacacttgaggctgtgatggcggcg
gatgaagagtcactaaaaaccgttcaagatattggtcatgtagttgcgaaacatgtggtc
aattttttccgtgaacctcataaccaagcggtgattgaagatttactgacgaaggcaaat
attcattggcctgaagtaaaagtcgttaatagtgcagaaatcgagagcccatttgcaggt
aaaacagtggtgctaacagggtcaatgagcgtattgacgcgtgatgaagccaaagacaag
ttagtggctttaggtgcaaaagtctcaggaagcgtctcgaagaaaacagatttggtcatt
gcaggtgaggccgctggttctaaattagccaaagcaaatgaacttggcatacgcgttatt
gatgaaaatgaattggttcgtttgctgaatatttaa
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