Panicum hallii (Hall's panicgrass): 112874224
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Entry
112874224 CDS
T07366
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
KO
K16189
phytochrome-interacting factor 4
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
112874224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phai03000
]
112874224
Transcription factors [BR:
phai03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
112874224
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Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
PRIMA1
Motif
Other DBs
NCBI-GeneID:
112874224
NCBI-ProteinID:
XP_025793215
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Position
9:complement(3630205..3633205)
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AA seq
420 aa
AA seq
DB search
MDSNARPAVNQKKPIVTDDDLVELLWHNGSVVAQAQAHLRPAPSDRSGSSGLTGEETAAW
FPDTLDDALEKDLYTQLWYSSIVDAAPHHGDTLPGPSSPPPPPELAHPVTPPVGSSGVES
SWAGDICSTFCGSNQVPRTPAGVNRGKDASLQSEVPRGAGPGTSSSGGSGSNYGGSGLPS
DSGHVQKGKGMCRDDSDSRSEDAECEATEEAKSSRRCGTKRRTRAAEVHNLSERRRRDRI
NEKMRALQELIPHCNKTDKASILDETIEYLKSLQIQVQIMWMTSGMAPMMFPGAHQFMSP
MALGMNSACIPAAQGLSQMPRVPYMNLSLPNHIPLNSSPAMNPINSPSAANQMQNVHLRE
ASNHFLHPGGGQTATPQVPGTHAYGPEIPQAEQHNRILEVPASTVAPTSMSGQPRTYGGA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggacagcaatgcgaggccagcggtgaaccagaagaagcccatcgtcacggacgacgac
ctcgtggagctgctgtggcacaacgggagcgtcgtcgcgcaggcccaggcgcacctgcgg
ccggcgccctccgaccgctcgggcagcagcggcctcaccggcgaggagaccgccgcgtgg
ttcccggacaccctcgacgacgcgctggagaaggacctgtacacgcagctctggtacagt
agcatcgtcgacgccgcaccgcaccacggggacacgctcccgggccctagctcgccgccg
ccgccgccggagctggcgcacccggtgacgccgccggtggggagcagcggcgtcgagtcg
agctgggccggcgacatctgttcgaccttctgcggcagcaaccaggtgcccaggacgccg
gcaggggtcaacaggggaaaggacgcgtcattgcagtcggaggtgccgcgcggcgccggc
cccggtacatcgtcgtccggcgggtccggaagcaactatgggggatccgggctgccgagt
gacagcggccacgtccagaaagggaaggggatgtgtagagacgactcggatagtcggagt
gaggatgccgagtgtgaggcaactgaggaggccaaatcatcgaggcgatgcgggacgaag
cgcaggactcgcgcagctgaagttcataatctctctgagaggagaagaagagaccggatc
aatgaaaagatgcgcgccttgcaagagctgataccgcactgcaacaagactgacaaagcg
tcgatattagatgagacaattgagtatctgaagtccctccaaatacaagttcagatcatg
tggatgacttctgggatggcaccgatgatgtttcctggtgctcaccaattcatgtcacca
atggctctaggcatgaattcagcttgcatccctgcagcacaaggcctaagtcagatgcca
agagtaccatacatgaacctttccctgccaaatcacatccctttgaactcatctccagct
atgaatccaattaattcaccaagtgccgcaaaccagatgcaaaatgttcatctcagggag
gcaagtaatcacttccttcacccaggtggcgggcaaacagcaacacctcaggtacctgga
acccatgcttatggacctgaaataccacaagctgaacaacacaataggatactggaagtg
ccagctagtactgtcgcgccaacctctatgtcaggacaaccgcgtacttatggtggagct
taa
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