Panicum hallii (Hall's panicgrass): 112880472
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Entry
112880472 CDS
T07366
Name
(RefSeq) nuclear pore complex protein GP210 isoform X1
KO
K14314
nuclear pore complex protein Nup210
Organism
phai
Panicum hallii (Hall's panicgrass)
Pathway
phai03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112880472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phai03019
]
112880472
Messenger RNA biogenesis [BR:
phai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112880472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_7th
Ig_NUP210_1st
Ig_NUP210_5th
Big_2
Ig_NUP210_2nd
Ig_NUP210_16th
Ig_NUP210_3rd
Ig_TMEM132_5th
Ig_NUP210_8th
Ig_NUP210_15th
Motif
Other DBs
NCBI-GeneID:
112880472
NCBI-ProteinID:
XP_025800893
LinkDB
All DBs
Position
2:11401952..11417164
Genome browser
AA seq
1974 aa
AA seq
DB search
MGSPPAAAAAVAAAVAVVAALLSASAAANPAGGPHMADLSVLLPSRMTKPVEYRLIGGDG
CFSWSWDHHDLISVKPEYNDSSRCSTSARLASISPYNGRMETSVYATDIISGITIHCKVF
VDKISRIRIFHHAVKIDLDEIATLRVHAFDDEENVFSSLVGLQFLWQLSPRLLDNSSHHL
VHIPLKETHLSDCGGFCGDLNVRFELEDKNLGSDLFVVKGIEIGQEVVKAQLFEPQFEHV
IDTITLTVAEAMSLEPPSPVLVTVGVLVKFKLKVFQQKVAQVVKLPSPYHRWHATNSSVA
QVDSSLGISRALSLGFTKVVVEDTRVEGHEQVSSLHVVIPRTLFLYLVPIMDDSAHLHGI
TNIPSSKVWYVYPGRKYMVLAKAFAEGFDAREIYITEENELKLESSTMEFWNLSLVPDSS
IGSYEVQTSRLLNPVSQGKGHLVASLTYRTEASGPAKALKIVQEVNVCSKVKVFWDEGLE
NSNVIHLPWVPGVYQEIELKAIGGCGKTLDDYKLFSSDEDVASVSDSRIVRAKKPGQAVI
RVVSAFDFLNFDEIIVEVSIPSVLSILPVFPVEVPVGTRLHASAALKTSTGYSFSRCDHF
NAFIRWSILSDNESFHILNTEEASSVEDIKRSAGSWGQNGNPCAWISLNAFAAGRSTVVA
MFAFDSDSNIENLGPISLKATSKISAYYPLVVLQGGNGNQFGGYWFDLSGIHSRIEKMDN
NIPKELYLVPRSAMDVFLFGGPERWDQVVDFVETVDVIGESENHITSSTAVQKLSSGIYR
VSCPSKVNYKLLFSRGNMIGKDHPVPAIAKSEFSVVCDFPSEITLIANENENRLDILEAA
SKADRGPDRLQASPVVISNGRNIRLAAVGIHGNGRFFANSSSLCLKWEASGCEGLAYFDE
TKSSEMLDESTWERFLVLQNSTGVMSSFSILNLQCTVRATVIGFSTKFAGQTHEEERTFH
TLTDAIQLQLVSSLRVTPEYVLLVFHPDAQENLIVSGGTCSLDASTNDTHVVQIVKHPGK
SLCSQLILGANGLGKAIVTIQDVGLSPRATTYSLARVANVDWIQIIAEEHISLMEGSTKD
FQILAGTQDGQTFGDSQFKYMGIELHLGDEILELISPMDSMDGSKFSIKAAKTGITSLYV
STRQHSGQRVLSQVVKVEVYKPLQIHPEYIYLTPGASFVLSVKGGPKTGVYIEYSSLNME
IVECQNATGKLSAKTVGNSTVRAAILANGGTLICEAFGRVEVDIPVAMILNTQSDRLCIG
CSMPIYPSLPKGDLFSFYETCQSYSWVIADEKVVIFQSAKSWQYRLGQGLYSEGKNNPWF
SNGSSNSFINHMIGRSAGKTKVSISVTCDFLLPGTTGSVVSYNASKTILVVPDPPLALVL
PMTWLFPPFYTTTSLLPRSANSLGEPDSHDLESSVGYSLLRGSGRSGSVIQDASIIDGNK
IRTGESNAVDCIQAKDHSTGRTEIASCLRVAEVAQAWIAAAESSVQIAYLSVNDRVELDI
KYADELGYTFHEAHGVAPVKIETNYPDVVSILMPRDFNDTYGTHERFVLQARSHGTALIR
LHVNHIPNKADFIMVSVGAQMYPRDVILHSGQHLNFTIIGDSMDTRGSGHWLSSNEKIVH
VNRVTGEAQARSEGVAEVIFKGSNLKLQTTVSVLKVNQIVVDAPGETLTNAAGPPDGYKF
SVRFSDSTEHNTGSSASPIAPFECMVDPSFVGYVEPWTDHAAKKSYCLFHPYPPAQLLPV
KLNPKEGFLHILVRANLKEDPKVTGSAHALFVKGFYIKEPGKLNLTPSCNHSIITIGGNT
DVELFWNAKDLLSVSRVDTNENKGVPSRIVYRVEVLKRQPFSDKVTIVLPATGQTEEVEI
SYDTGEEAEPSSSWGPTTFVVILTCIIVLVVTVVFMKSLERPSRRAPPRNAAASTPVRAP
AASPAPMADPASPANGQLSPRTPQPFMEYVRRTIDDTPYYKRDSRRRFNPQNTY
NT seq
5925 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgccgccggccgctgcggcagcggttgcagcggcggtcgcggtcgtggcggcg
ctgctgtcggcctcggctgcagccaaccccgcgggcggaccccacatggcggacctgagc
gtgctgctgccctctcgcatgaccaagcccgtcgagtaccgcctcatcggcggggacgga
tgcttctcctggtcatgggatcatcatgatcttatttcagttaaaccagagtacaatgat
agcagcagatgctcgactagtgctcgtttggcatcaatttccccttacaatggccggatg
gagacttctgtctatgcgactgatattatcagtggaatcacgatacactgcaaagtattc
gtggacaagatctctcggatcaggattttccatcatgctgttaaaattgacctagatgaa
attgccacattgcgtgttcacgcctttgatgatgaagaaaatgtattctcgtcattggtg
ggattgcagttcttatggcagctttccccaaggttgcttgataacagtagccatcatctt
gttcatattccactgaaagaaacacatttgagtgactgtggtggcttttgtggtgatttg
aatgttcggtttgagctagaagataagaatctcggttcagatttatttgtggtgaagggt
attgagatcggccaagaagttgttaaagctcagttattcgagcctcagtttgagcatgtg
attgacacaatcacattaactgttgctgaagctatgtcactagagccaccatcaccagtt
ctcgtgactgttggtgttttggtgaagtttaaactcaaggtttttcaacaaaaagttgct
caagtggttaagttaccatcaccatatcatcgatggcatgcaacaaactcttctgtggcc
caagtagatagttccttgggtatctcacgtgctttgagtctgggatttacaaaggttgtt
gttgaagacacaagagtagaaggccatgaacaagtatcatctctacatgttgttattcca
cgaacactcttcctttatctggtccctattatggatgattctgctcatcttcatgggata
acaaatattccatcctcaaaagtttggtatgtttatcctggacgaaagtacatggtcctt
gccaaagcgtttgcagagggatttgatgctagggagatatatattacagaggaaaatgag
cttaaactggagagtagtaccatggaattctggaacttatcactggtgccagacagttct
ataggttcttatgaagtgcaaacttctagattgttaaatcctgtttcccagggtaaagga
catttagttgcttccttaacttaccgaacagaggcatctggaccagcaaaggctctcaag
attgtgcaagaggttaatgtttgtagtaaggtgaaggtattctgggatgaaggattggag
aactccaatgttattcaccttccctgggttcctggagtttaccaggaaattgaactgaag
gcaattgggggctgtggtaagacgttggatgactacaagttattttcctctgatgaagat
gttgcttctgtatctgactctcgtatcgtgcgtgcaaaaaagcctggtcaagctgtcatc
agagtagtttctgcttttgatttcttgaactttgatgagatcattgttgaagtttccatt
ccttcagtattgtctattctgccagtctttcctgtggaggtgcctgttggaacacgactt
catgcttctgcggcgctaaaaacatctactggatactcattctcacgatgtgaccatttt
aatgcttttataaggtggagtatactatctgataatgagtcttttcacattcttaacact
gaggaggcttcgagcgttgaggacataaaacgtagtgctggttcttggggacaaaatggg
aatccttgtgcctggatatctctaaatgcatttgctgctggccgatccacagtagttgca
atgttcgcctttgattcagattctaatattgagaatcttggacccatttctctaaaggca
acttcaaaaatttctgcatattatcctttggtggttcttcaagggggaaatggaaaccaa
tttggtgggtactggtttgatttgtctgggatacatagtaggattgagaagatggataac
aacattcccaaggagctatacctagttcctagatcagcaatggatgtttttctctttgga
ggacctgagcggtgggaccaagtggttgattttgtcgaaacagttgatgtgattggtgaa
tcggaaaatcatattactagttctactgctgtgcagaaattatctagtggaatataccga
gtatcttgcccaagcaaagtgaactataaactgctattctcacgtggcaacatgattggg
aaagatcatcctgtgcccgctatagccaaatcagagttttctgttgtgtgtgacttccca
tcagaaattacattgatagcgaatgaaaatgaaaaccgacttgatatattggaagccgct
agcaaagctgaccgaggtcctgatagattgcaagcatcacctgttgtaatctccaatgga
agaaatatacgtctagctgctgtgggtatacatggaaatggaaggttttttgctaattca
tcttctctttgcctgaaatgggaggccagtggatgtgaagggcttgcttattttgacgaa
accaaatcttctgaaatgcttgatgagtcaacttgggagaggtttcttgtcctacagaat
tctacaggagtgatgtcttcattttcaattttgaacctccagtgcactgtgcgtgctaca
gtcattggcttctcaaccaaatttgctggccaaactcatgaggaagaacgcacatttcat
actctcacagatgctattcagttgcagcttgtttcttccttaagagtcactccagaatat
gtcttgttagttttccatcctgacgcacaggaaaatttgattgtcagtggtggaacatgc
tccctagatgcttctaccaatgacacacatgtggtgcaaatagttaaacatccaggaaaa
tccttatgttctcaattgattcttggagctaatggcttaggcaaagctatcgtcacaatc
caggatgttggcctttctcctagagcaacaacttattctttggctagagttgcaaatgtc
gactggattcagataattgcagaagagcacatcagccttatggaaggaagcacaaaagat
tttcaaatattggctggaacccaagatggacaaacatttggcgattctcagttcaaatat
atgggcattgagttgcaccttggtgatgagattctggagcttattagtccaatggattca
atggatggatccaaattttcaattaaagctgcaaaaactggcataacatctctatatgtc
agtactaggcaacactctggacaaagagttttgagtcaggtcgtaaaggtggaggtgtac
aaaccattgcaaatacatcccgagtatatatacctcactccaggcgcctcttttgtgctt
tccgttaaaggtggtccaaagactggagtttacattgagtactcaagtctgaacatggaa
attgtagaatgtcaaaatgctactgggaagctgtctgcaaagactgtggggaactctact
gtacgtgctgctattttggcaaatggaggtaccctaatttgtgaagcttttggacgagtc
gaagtggatatcccagtggctatgattctgaatactcaaagtgaccgtctttgtattggt
tgtagcatgccaatctatccttctctgcctaagggagatctattttccttctatgaaact
tgccaaagttacagttgggtgatagcagatgagaaggttgtaatattccaatcagctaaa
tcttggcaatacagacttggccaagggctatattcagaaggaaaaaacaatccatggttt
tccaatggcagtagcaattcttttatcaatcatatgattggaaggtctgctgggaaaacc
aaagtttccatttcagttacttgtgacttcttgctacctggcaccactggatctgttgta
tcatacaatgcctccaagaccattctggtggttccagatcctccccttgcacttgtactt
cccatgacttggttattcccccccttttatactactacaagccttttgcctagatcagca
aattcacttggagaaccagactcacatgacctggaaagttctgttgggtattctctgcta
aggggcagtggtaggagtggttctgtgatccaagatgctagcataattgacggaaataag
attaggactggagaaagcaatgcagttgattgtattcaagcaaaagaccactcaactgga
agaacagaaatagcgtcatgcctacgagttgctgaggttgcacaagcatggatagctgct
gcagaatcatcagtccagattgcctatctatccgtaaatgatagagttgaattggatata
aaatatgctgatgaattaggttataccttccatgaagctcatggagtagcccctgtaaag
atcgagacaaattatcctgatgttgtgtccattctcatgccaagagattttaatgataca
tatggcacacatgaacgttttgttcttcaggcgagaagtcatgggacagctcttataagg
ctgcacgtaaaccatattcccaataaagcggatttcataatggtatctgttggtgcacaa
atgtatcctagggatgtgatccttcattctggccagcacctcaacttcactattattgga
gacagtatggacacgcgtggatctggtcactggttaagtagcaatgaaaagattgtgcat
gtcaatcgggtaactggtgaagcacaggcacgtagtgaaggtgtagcagaagtaatattc
aaaggttcaaatcttaagttgcaaacaactgtcagtgtgctcaaggtgaaccaaatagtt
gttgatgctcctggagagacactgactaatgctgctggcccacctgatggatataagttc
tctgtaagattcagtgattcaactgagcacaacactggatcctctgcgagtccaattgcc
ccgtttgagtgcatggttgacccttcttttgttgggtatgttgagccatggactgaccat
gccgcaaagaaatcctattgcctgtttcatccatatccacctgcacagctgctgcctgtc
aagttgaacccaaaggaaggatttttacacattttagttcgtgcaaatctaaaggaagac
ccgaaagtgacaggatctgcacatgccctttttgtcaaaggattttacatcaaagaacct
gggaagttaaatttgactccaagttgcaatcatagcatcattactattggtggaaatact
gatgttgagttattctggaatgctaaagatttactctcagtcagtcgtgttgacacaaat
gagaacaagggtgttcctagtcgaattgtctacagggttgaagtgctaaaaaggcaaccc
ttctctgacaaggtcactatcgttcttcctgccactggccagactgaagaagtcgagatc
agctatgatacaggagaggaggcggagccttcatcatcatggggcccaaccacatttgtg
gttatcctcacatgcatcattgtactggtagttacggttgtcttcatgaagtcgctggag
aggcctagcagacgtgcaccgccacggaatgcggcagcatccacaccagtgcgagcaccg
gcagccagtcccgccccaatggccgaccctgcgtccccagctaacggccagctctcgcct
cgcacgccccagccattcatggagtatgtgcggaggaccatcgacgacacaccctactac
aagcgcgacagcaggaggcgattcaacccccagaacacgtactga
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integrated database retrieval system
