Panicum hallii (Hall's panicgrass): 112883587
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Entry
112883587 CDS
T07366
Name
(RefSeq) DNA repair protein RAD16
KO
K15083
DNA repair protein RAD16
Organism
phai
Panicum hallii (Hall's panicgrass)
Brite
KEGG Orthology (KO) [BR:
phai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phai03400
]
112883587
DNA repair and recombination proteins [BR:
phai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
112883587
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
ResIII
zf-RING_Vps41
RING_XB3-XBAT31
zf-rbx1
zf-C3HC4_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
112883587
NCBI-ProteinID:
XP_025804695
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Position
2:50806787..50813397
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AA seq
864 aa
AA seq
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MPRRAGNPSSGSSRGRRRRRDEEDEDELSSNTTSDSDFVADSEEEVGDDDEGFASDEDAP
PAPAPAPAMAAPPPPPMLMPVPNRARNRGGQRRRGKKARDEDLPPLPWQVWEAANDRWLD
EREKPPGHGGPPDDAGAAAAGAGAPVPTADPAPEVVLPLLRFQKEWLAWALAQEASVSRG
GILADEMGMGKTIQAISLVLTARRLRPPGHHHSAASSSSSSAGRPMRQVGCTLVVCPVVA
VIQWTEEIERHTASGSARVLIYHGAKRGTKKFDFNNYDFVVTTYSTIEADYRKHIMPPKI
RCQYCDKLFYPNKLKVHLKYFCGPDAVRTEKQAKQQSKKWGGSRGKGKGSGHKKDGDEEN
KDFDELADEPVSQSRGQSPLHSVRWERIILDEAHFIKDRRCNTARAIFALESEYKWALSG
TPLQNRVGELYSLIRFLQIFPYSNYFCKDCNCEILDTSMKKQCDCGHSSVRHFCWWNKYI
ARPIQWGSASDEGKRAMMLLKEKVLKGIVLRRTKKGRAADLALPPKIVTLRRDSFDKNEM
EFYEALYTQSVTQFDSYVVAGTLMNNYAHIFDLLTRLRQAVDHPYLVAYSKTAGPREGFK
NEGNESMESQCGICHNVAEDVVVTSCDHAFCKTCLMDYSATLGNVSCPSCSVPLTVDLTT
KGSVGKVTPSVKGRKRSGILSRLASLEDFKTSTKIDALREEIRNMIEHDGSAKGIVFSQF
TSFLDLIQFSLEKSGIKCVQLNGAMNITEKGRAIDNFTNDPDCRIFLMSLKAGGVALNLT
VASHVFVMDPWWNPAVESQAQDRIHRIGQFKPIKSTRFVIKDTVEERILQLQEKKQLVFE
GTVGDSPDAMSKLTEADLKFLFQI
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccgagccgggaacccctcctccggatccagccgcggccggcgccgccgccgc
gatgaggaggacgaggacgagctctcctcgaacaccacctccgactccgatttcgtcgcc
gactccgaggaggaggtgggggacgacgacgaggggttcgcgtccgatgaggacgcccct
cccgcgcccgcgcccgcgcccgcgatggcggcgccgccaccgccgccgatgctgatgccg
gtgccgaatcgggcgcggaaccggggtgggcagaggaggagggggaagaaggcgagggac
gaggacctgccgcccctgccgtggcaggtgtgggaggcggccaacgacaggtggctcgac
gagcgggagaagccccccggccacggcgggccccccgacgacgccggggccgcggctgcg
ggggcgggggcgcccgtgcccaccgcggacccggccccggaggtggtgctcccgctgctg
cgcttccagaaggagtggctcgcctgggcgctggcgcaggaggcctccgtctcgcggggc
ggcatcctcgccgacgagatggggatggggaagaccatccaggccatctcgctcgtcctc
accgcgcgccgcctccggcccccgggccaccaccactccgcggcatcctcctcctcatcc
tcagcggggcgcccgatgcgacaggtcgggtgcacgctggtcgtctgcccggttgtggcc
gtcatccagtggacagaggagatcgagcggcacaccgccagtggcagcgcgcgcgtgcta
atctaccacggcgccaagcggggcacgaagaagttcgacttcaacaactacgacttcgtc
gtcaccacctactccaccatcgaggcggactaccggaagcacatcatgccacccaagatc
cggtgccaatactgtgacaaattgttttaccccaacaagctgaaggtgcacttgaagtat
ttctgcggacctgatgccgtgcgcacagagaagcaggcgaagcagcagagcaagaagtgg
ggcggcagcaggggaaagggaaagggaagtggtcataagaaggacggtgatgaggagaat
aaggattttgatgaattggctgatgaaccagtcagccagtcaaggggtcagtcgcctctg
cactctgtacggtgggagcggatcatcttggatgaggctcacttcataaaagatagacgg
tgtaatactgcaagggctatttttgcattagagtcagaatacaagtgggctctgagtggg
acacctttgcagaaccgcgttggagaactttactcacttattcgcttcttgcaaatcttc
ccctattcgaactatttctgcaaggactgtaactgtgagatactagataccagtatgaag
aaacagtgcgactgtggtcactcatctgttaggcacttctgctggtggaataagtacata
gcgaggccaatacagtggggttcagcaagtgatgaaggcaaaagagccatgatgcttctg
aaggagaaagttctgaaaggcatagtgttaaggcgcaccaaaaaaggccgggctgcagat
cttgctctcccaccaaagattgtgacattgaggcgggactcttttgataaaaacgaaatg
gaattctatgaagctttgtatactcaaagcgtcacacagtttgattcatatgtagttgct
ggaacactgatgaacaactatgctcatatcttcgatcttctcacgaggttgagacaggct
gttgatcatccttaccttgtagcatattctaagacagcaggacctcgtgaaggatttaaa
aatgaaggaaatgagtccatggaaagccaatgtggtatatgtcataatgtggctgaagat
gtcgtggttacctcttgtgatcatgcattctgcaagacttgtttgatggactactctgca
actttggggaatgtttcatgtccatcctgttcagtacctcttactgtcgacttaacaaca
aaaggttcagttggaaaagtaactcctagtgtcaagggtcgcaaacgctctggaatactg
agcagactagcaagccttgaggattttaagacaagtacaaaaattgatgccttgagagag
gagatacgaaacatgattgagcacgatggctctgccaaagggattgtgttcagccagttc
acatcattcttggatctgattcaattctccctggagaagtccggcatcaagtgtgtccag
ctgaatggggccatgaacattaccgagaagggaagagccatagacaacttcaccaatgac
ccagactgcaggatcttcctgatgagcctgaaagctggaggagtagctctgaatctcact
gttgcatctcatgttttcgtgatggacccttggtggaatccagcggtcgagagccaagcc
caggatcgcatccaccgaatcggacagttcaagccaatcaagagcacgaggtttgtgatc
aaagacaccgtcgaagagcgcatactgcagctgcaagagaagaagcagctggtgttcgaa
ggcaccgtgggcgactcgccggatgccatgtcgaagctcacagaggccgacctcaagttt
ctgttccagatctaa
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