Polaribacter haliotis: H9I45_00170
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Entry
H9I45_00170 CDS
T06834
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phal
Polaribacter haliotis
Pathway
phal03030
DNA replication
phal03410
Base excision repair
phal03420
Nucleotide excision repair
phal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9I45_00170 (ligA)
03410 Base excision repair
H9I45_00170 (ligA)
03420 Nucleotide excision repair
H9I45_00170 (ligA)
03430 Mismatch repair
H9I45_00170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phal03032
]
H9I45_00170 (ligA)
03400 DNA repair and recombination proteins [BR:
phal03400
]
H9I45_00170 (ligA)
Enzymes [BR:
phal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H9I45_00170 (ligA)
DNA replication proteins [BR:
phal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H9I45_00170 (ligA)
DNA repair and recombination proteins [BR:
phal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H9I45_00170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H9I45_00170 (ligA)
MMR (mismatch excision repair)
DNA ligase
H9I45_00170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H9I45_00170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH_3
HHH
AphA_like
Motif
Other DBs
NCBI-ProteinID:
QOD60898
UniProt:
A0A7L8AFW2
LinkDB
All DBs
Position
76433..78430
Genome browser
AA seq
665 aa
AA seq
DB search
MTVLERIQLLRDELNNHNYNYYVLDNATISDFDFDIKLKELEKLEIENPEFFDSNSPTQR
VGGAITKNFETITHKNRMYSLDNSYSKEDLLDWEKRVQKGLGREDLEYTCELKFDGASIN
LTYENGKFIKAVTRGDGFQGDNVTANVKTIRSIPLSIKNEFVSNFQMRGEIILPLDGFNK
MNEERVANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTEERKYKTHFEILEN
ARNVGFKVPKTITLAKTIDEVFDFVNHWDKKRHDLPYETDGVVIKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVSTVLNEITYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIA
KLDIRENDTVFVEKGGEIIPKIIAVDLTKRPIDSQPTMYATNCPECNTALVRTEGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKEGLIQNYADLYDLKVEQVIPL
ERMAEKSAQNMIAGIEKSKEIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMTANFEE
LINVDEIGDRIAQSIVDFSNDLGNIQLIERLKVYGVQLEVSAESLENQTNKLEGQVFVVS
GVFHQMSRNELKKAIEDNGGKVSSSISKKTNFIVAGDNMGPSKLTKAQDLGISIISEQDF
IDKIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgacggttttagaaagaatacaattacttcgtgacgaattaaataatcacaactataat
tattatgtgttagataatgcaacaatttctgacttcgattttgatataaaactaaaagaa
ttagaaaagttagaaatagaaaatccagaatttttcgattcaaactcaccaacacaaaga
gtaggaggagccatcaccaaaaacttcgaaactataacacataaaaacagaatgtattct
ttagacaactcgtattcgaaagaagatttgttagattgggaaaaacgagttcaaaaagga
ttaggaagagaagatttagaatatacttgcgaattaaaattcgacggagcttccataaac
ttaacctacgaaaacggaaaatttataaaagcagttacaagaggagatggttttcaagga
gataatgttactgcaaacgtaaaaacaatccgttccattccattatcaatcaaaaatgaa
tttgtttcaaattttcaaatgcgtggagaaatcattttgccattagatggtttcaataaa
atgaatgaagaacgcgttgcaaatggagaagaagaatatagaaatccaagaaacactgca
agtggaagtttaaaattgcaagacagtgcagaagttgcaaaaagacctttagattgttta
ttgtatcaagttgtaacagaagagcgtaaatacaaaacccatttcgaaattttggaaaac
gcaagaaacgttggttttaaagttccaaaaacaatcactttagcaaaaacgatagacgaa
gttttcgattttgtaaatcattgggataaaaaacgccacgatttaccttacgaaacagat
ggcgtagttataaaagtgaataatttacagcaacaagaagagttaggttacacatcaaaa
gctccaagatgggcaattgcctataaatttaaagcggaacaagtttctacagttttaaat
gaaattacatatcaagttggtagaactggtgcaattacgcctgttgcaaatttagaacca
gttcaattggcaggaactacagtaaaacgtgcttctttacacaatgcagatcagatagca
aagttagatattcgagaaaatgatactgtttttgtagaaaaaggtggagaaattatccct
aaaataatagcagtagatttaacaaagcgtccaattgattctcaaccaacaatgtacgca
acaaattgcccagaatgtaatacagcattggtaagaacagaaggcgatgcaaaacattat
tgcccaaatgaatttggttgtgctccacaaattacaggtagaatccaacatttcatcagc
agaaaagcaatggatattgatggtttaggtggcgaaactgtagatttattaagaaaagaa
ggtctcattcaaaattatgcagatttatacgatttaaaagtggagcaagtaattccatta
gaaagaatggcagaaaaatctgctcaaaatatgattgcaggaatcgaaaagtcaaaagaa
attcctttcgaaaaagtattatttgcactcggaattcgttttgttggagaaacagttgct
aaaaaattagcaaaacatttcaagtctatcgacaatttaatgactgcaaatttcgaggaa
ttaataaatgtcgacgaaattggagatagaattgcacaaagtattgtagatttttcaaac
gacttgggtaatattcaattaatagaacgtttaaaagtatatggagttcaattagaagtt
tccgcagaaagtttagaaaaccaaactaataagttagaaggacaagtttttgttgtttca
ggcgttttccatcaaatgagtagaaacgaactcaaaaaagcaattgaagataatggaggt
aaagtaagttcatcaatctctaaaaaaacaaattttattgttgcaggtgataatatgggc
ccaagtaaacttacaaaagcacaagatttaggtatttcaattatttccgaacaagatttt
atagataaaatcagttag
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