Peptoniphilus harei: NCTC13077_00894
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Entry
NCTC13077_00894 CDS
T05838
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phar
Peptoniphilus harei
Pathway
phar03030
DNA replication
phar03410
Base excision repair
phar03420
Nucleotide excision repair
phar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC13077_00894 (ligA)
03410 Base excision repair
NCTC13077_00894 (ligA)
03420 Nucleotide excision repair
NCTC13077_00894 (ligA)
03430 Mismatch repair
NCTC13077_00894 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phar03032
]
NCTC13077_00894 (ligA)
03400 DNA repair and recombination proteins [BR:
phar03400
]
NCTC13077_00894 (ligA)
Enzymes [BR:
phar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC13077_00894 (ligA)
DNA replication proteins [BR:
phar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC13077_00894 (ligA)
DNA repair and recombination proteins [BR:
phar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC13077_00894 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13077_00894 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC13077_00894 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC13077_00894 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
RNA_ligase
5_3_exonuc
DUF7501
HHH
DNA_pol_lambd_f
BRCT_2
Ish1
QueH
Motif
Other DBs
NCBI-ProteinID:
VEJ34170
LinkDB
All DBs
Position
1:complement(941981..943978)
Genome browser
AA seq
665 aa
AA seq
DB search
MNNKIKEMEDLIKEIDKLNYHYYTLDDPLLSDAEYDKLYDRLVNLENESGTVLSYSPTTR
VGGAVLSKFEKHTHLGKLYSMDKAQGDDALLAWYSRIEKFVNNYNENNINKLPEPEFIVE
LKFDGLTINLTYENQNLIMASTRGNGIVGEEILEQVKTIYSVPLRISYPGKIEVQGEGLM
PLSELEKYNQENEEKLKNARNAAAGALRNLDPKVTKKRNLTAYFYNVGYIEEDIFKSDDE
MKKFLKENNFNVSKYNYKLKKFSEIIKKIQEIGENRNKLDILIDGVTIKVNDIETRRALG
YTNKFPRWAIAYKFEAEEISTTLLDVVWNVGRTAKVTPSAILEPVGIGGVTVQRATLNNY
DDILRKKVRIGSRVLIRRSNDVIPEILGTLPSDNETHEIEKPKTCPYCGSHLYQDGVHIF
CPNTLSCVPQLVSRLTHFASRDAMDIEGFSEKTIEKLMGTVGLKEIPDVYKLRYEDIIKI
EGFKEKRTNNLLNAIENSKHPHLSNFIYALGIPNVGIKTARDLANHFKSFDKLRNSKEDE
LISIGDIGSITAKEIVEFFHDERIVNSVNELFDLGINPLYEDDSNGPKPLDKKTFVLTGT
LEIPRKELEEKLISLGAKVTGSVSKNTDYLVVGENPGSKYDKARDLKIEILSLEELDNLV
GGLNE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaataataaaataaaagaaatggaagatttaataaaagaaattgataaattaaactac
cattactatactcttgatgatccacttttatccgatgctgagtacgacaaactatatgat
aggttagttaatcttgaaaatgaaagtggtacagtcttgtcatattctcccacaacaaga
gtaggaggagctgtcctaagtaagtttgaaaagcacactcatcttggaaaactttattca
atggataaggcccagggagatgatgcccttcttgcttggtatagtaggatagaaaaattt
gtaaataattataatgaaaacaatattaataaattaccagaaccagaatttatagttgaa
cttaaatttgatggacttactattaacttaacttatgagaatcaaaaccttataatggct
tcaactagggggaatggaatagttggagaagagattttggagcaagttaagactatctat
tcagttcctttgaggatttcttatccaggtaaaattgaagttcaaggagagggattaatg
cccctatctgaacttgaaaagtataaccaagaaaatgaagaaaaattaaaaaacgcaaga
aatgcagctgctggagcattgagaaatcttgaccctaaagttactaagaaaagaaactta
acagcttatttttataatgttggttatattgaagaagatatctttaaatcagatgatgag
atgaaaaaattcttaaaagaaaacaattttaatgtctcaaaatacaattataaactcaag
aaattttctgaaataataaaaaagattcaggaaataggtgaaaataggaataaattagat
atcttaatcgatggtgtaacgataaaagttaatgatatagaaactagaagagctttaggg
tatacaaataagtttcctcgttgggcaattgcatataagtttgaggcagaggaaatatcg
acaactctacttgatgtagtctggaatgttggacgtactgcaaaggtaacaccttctgct
atacttgagccagtaggtattggtggcgtcacagtacaaagggctactctaaataattat
gacgatatacttaggaaaaaagttaggattggttcaagagttttaattagaaggtctaac
gacgttattccagaaattcttggtacccttccaagtgataatgaaactcatgaaatagaa
aaacctaaaacttgtccatattgtggttctcacttatatcaagatggtgtccatatattt
tgtcctaacacactatcatgtgttccccaactggtatcaaggctcactcattttgcatct
agagatgcaatggatatagaaggctttagtgaaaagacaatagaaaagttaatgggaact
gtaggtttaaaagagattcccgatgtttacaagctaagatatgaagatataattaaaata
gaaggttttaaagaaaagaggacaaataatcttttaaatgcaattgaaaattctaagcat
cctcatttgtcaaacttcatttatgctcttggtatacctaatgttggaataaaaactgcc
agagacttagctaatcactttaagtcctttgacaaattaagaaattctaaagaagatgag
cttatttctattggagatattggaagcataactgctaaagaaatagtggagtttttccac
gatgaaagaattgttaactcagttaatgaattatttgatttagggattaatccactttat
gaagatgatagtaatgggcctaagccccttgataaaaaaactttcgtcttaacaggtact
cttgaaattcctagaaaagagcttgaagaaaaactaatatcccttggagctaaagtgaca
ggttctgtaagtaaaaatactgactaccttgtagttggagaaaatccaggatctaagtat
gataaggcgagagatttaaaaatagaaattttaagtttagaagaacttgataacttagta
ggaggtttaaatgaataa
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