Pseudomonas hefeiensis: PSH57_19640
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Entry
PSH57_19640 CDS
T09985
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phef
Pseudomonas hefeiensis
Pathway
phef03030
DNA replication
phef03410
Base excision repair
phef03420
Nucleotide excision repair
phef03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSH57_19640 (ligA)
03410 Base excision repair
PSH57_19640 (ligA)
03420 Nucleotide excision repair
PSH57_19640 (ligA)
03430 Mismatch repair
PSH57_19640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phef03032
]
PSH57_19640 (ligA)
03400 DNA repair and recombination proteins [BR:
phef03400
]
PSH57_19640 (ligA)
Enzymes [BR:
phef01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSH57_19640 (ligA)
DNA replication proteins [BR:
phef03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSH57_19640 (ligA)
DNA repair and recombination proteins [BR:
phef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSH57_19640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSH57_19640 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSH57_19640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSH57_19640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WLH11074
LinkDB
All DBs
Position
complement(4366110..4368467)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAVQTRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQ
RVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPVLEVRG
EVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVTA
DIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPENARPVEIPQHCPVCGS
HVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHGL
DIQDQGELGAEFSASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQAL
PEKQANAVREFFAIAANRQLAEAAEQQLQAFGMHWQSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVAFLSQ
HGITV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgactgccgtccaaacccgcatccaacagctgcgtaccgagctggatcagcacaactac
cgctaccacgttctcgatgagccgagcattccggacgccgagtacgaccgcctgttccat
gagctcaaggccctggaagagcaacacccggaactggtgaccagtgattccccgacccag
cgtgtcggcagtgttgcactgtcggccttcagccaggtccgtcacgaaatcccgatgctc
agcctgggcaatgccttcgacgaaaccaccatgcgcgaattcgaccgccgcgtgaccgaa
ggtctcgacctgcccatgggcgacttgctgggcggcggcgcggcggtggagtacagctgt
gagccgaagctcgatggcctggcggtcagcctgttgtaccaggacggcctgctggtgcgc
ggcgccacacgcggcgacggcaccaccggcgaagacatcagcgtcaacgtacgcacggtg
cgcaatatccctctcaaactgcagggcagtggctggccgccggtgctggaagtgcgcggc
gaggtgtacatgtccaaggccggcttcgagcgtctcaacgccacgcaactggaggcgggc
ggcaagaccttcgccaatccgcgcaacgcggctgcgggcagcctgcgccagctggattcg
aagatcaccgccaatcgtcccttggaattctgctgctacggcatcggtcaggtgacggcg
gacattgccgacacccacatcggcaatctcaagcaactcaaggcctggggcctgcccatc
agccgcgaattgaaactggcccacggcatcgacgagtgcctggattactaccgcgacatc
ggcgagcggcgtaacgcgctgccttacgaaatcgacggcgttgtgttcaaggtcaacagc
atcgcctcccagcgcgaactgggtttccgcgcccgggaaccgcgctgggccatcgcccat
aaattcccggccagcgaagagctcaccgaactgttggacgtcgagttccaggtcggccgc
accggcgctgtaacacccgttgcgcgactcaagccggtcaaggtggccggcgtgaccgtg
gccaacgccacgctgcacaacatggacgaggtggcgcgcctgggcctgatgatcggggac
acggtgattatccgccgcgccggtgacgtgatcccgcaagtggtgcaagtggtcaccgag
cgtcgcccggaaaacgcccgccccgttgaaatcccgcaacactgcccggtttgcggctcc
catgtggaacgtacgcaactgatcaagcgcagcaaggggcgcgaaaccatcagcgaaggc
gcggtgtaccgttgcgtcggtcgtctggcctgtggcgcgcagctcaagcaggcaatcatt
catttcgtgtcgcgccgggccatggacatcgaaggcctgggcgagaagagcgtcgaacag
ttggtcgatgaaggtctggtgggttcgcctgccgatctgtatgccctgaccttcgagcag
gtggttgacctggaaggcttcgccgaactgtcgagcaagaacctgttggcggccatcgtc
gacagcaagaagccgagcctggcgcgctttatctacgccctcggcatcccggacgtgggc
gaggaaaccgccaaggtcctggctcgctccctcggttcactggagcgtgtgcaagcggcc
ttgccgcaagtgctcacgtacttgccggacgtcggcctggaagtggctcacgagatccac
agcttcttcgaagacccgcacaatcgccaggtgatcaaggacctgctgcgccatggcctg
gatatccaggaccagggtgaactcggcgctgaattctccgccagcaccaccctgggtggt
tttctggacaaactgaacattccctcggtcgggccgggcggggcgcagaaactggcggac
aagtttggctctctcgaagcggtgatgaacgccgactggctggacatgcgccaggccctg
ccggagaaacaggccaacgccgtgcgcgagttcttcgccatcgccgccaaccgccaactg
gccgaagccgccgagcagcaactacaggccttcggcatgcactggcaaagcgagaaaaag
gtcgtcgaaggtttgcccgaggcgggacacacctgggtgctgaccggctcgctggagttg
atgagccgcgatgtcgccaaggacaagctggaaagcctgggggccaaggtggccggttcc
gtgtcggcgaaaacccactgcgtcgtcgccgggccaggggcgggctcgaaactgaccaag
gccaacgagctggggctcaaggtgctggatgaagaagcgtttgtggcgtttttgagtcag
cacggcatcacggtttag
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