Providencia heimbachae: NCTC12003_01476
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Entry
NCTC12003_01476 CDS
T05509
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phei
Providencia heimbachae
Pathway
phei03030
DNA replication
phei03410
Base excision repair
phei03420
Nucleotide excision repair
phei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC12003_01476 (ligA)
03410 Base excision repair
NCTC12003_01476 (ligA)
03420 Nucleotide excision repair
NCTC12003_01476 (ligA)
03430 Mismatch repair
NCTC12003_01476 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phei03032
]
NCTC12003_01476 (ligA)
03400 DNA repair and recombination proteins [BR:
phei03400
]
NCTC12003_01476 (ligA)
Enzymes [BR:
phei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC12003_01476 (ligA)
DNA replication proteins [BR:
phei03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC12003_01476 (ligA)
DNA repair and recombination proteins [BR:
phei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC12003_01476 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC12003_01476 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC12003_01476 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC12003_01476 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH
DNA_pol_lambd_f
RNA_ligase
DUF4874
Motif
Other DBs
NCBI-ProteinID:
SQH12776
LinkDB
All DBs
Position
1:1682092..1684128
Genome browser
AA seq
678 aa
AA seq
DB search
MTTKPAIEDLKQHIDALKQQLRHHEYQYHVLDAPEIPDVEYDKLMQELKAIEAQYPELIT
RDSPTQRVGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDHTELTFCCEL
KLDGLAVSLLYENGELVQAATRGDGTVGENITTNVRTIRAIPLRLTGDNIPARVEIRGEV
FMPQKGFEALNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLAFYCYGVGLVEGET
LPDTHYERLVQFKAWGLPVSDYVQLRIGHQAVLDYYREIEQVRSQLGFDIDGVVIKVNAI
AIQEELGFVSRAPRWATAFKFPAQEQITLLKEVEFQVGRTGAITPVARLEPVQVAGVIVS
NATLHNADEIERLGVHIGDTVVIRRAGDVIPQIVSVMVDKRPADSREIIFPIQCPVCGSD
VERVEGEAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADL
YQLSAGKLTGLDRMGPKSAQKVIDALEKSKQTTLARFIYALGIREVGEATAANLAAHYTT
LDAVMTADEESLKTVQDIGHIVAKHVVNFFHEEHNQSVISDLINKANIHWPEVKVINSAE
IDSPFAGKTVVLTGSMNILTRDEAKDKLVALGAKVAGSVSKKTDMVIAGEAAGSKLVKAN
ELGIEVIDEEELIRLLNI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactacgaaacctgcgattgaagatctaaaacaacatatcgacgcgctaaaacaacaa
ctacgccatcatgaatatcagtatcacgttttggatgcccctgaaatcccggatgttgaa
tacgataaattgatgcaagaacttaaagccattgaagcacaatatccggaacttattacc
cgtgattctccaacccaacgagtgggtgcggcgcctctcgcagcttttgataccgttcgt
catgaaattcctatgttatcgttggacaacgttttcgatgaagaaagctatcttgcattt
gataagcgggtacgtgacaggttaaaggatcacaccgagctaactttttgttgtgagtta
aaacttgatggcttggcggtcagcttactgtatgaaaatggtgaattagtacaagcggca
acccgtggcgatggaacggtaggggaaaacattaccacaaatgtcagaaccatccgtgcg
atcccactgcgtttaacgggggataacattcctgctcgtgttgaaatccgaggtgaagtg
tttatgcctcaaaaagggtttgaagcattaaatgaggaagctcgccgaacagacggtaaa
gtatttgcaaatccacgtaatgccgccgcgggttcattgcgtcaactcgatccacgtatt
actgcaaaaaggccattagctttttattgctatggcgttggcttggtggaaggtgaaaca
ttaccagatacccactatgagcgtttggtgcaattcaaagcttgggggctaccagtcagt
gattatgtccagttacgcattggtcatcaggctgttttagattattaccgtgaaatcgag
caagttcgttcgcaattagggttcgatatcgatggtgtggtgattaaagttaacgcgatt
gctatccaagaagaattaggctttgtatcaagagcacctcgctgggcaacggcgtttaaa
tttccggcgcaagagcaaataaccctgctaaaagaggttgagtttcaagtcggccgcaca
ggtgctatcaccccagtagcgcgtctcgagcctgtacaggttgcgggtgttatcgtcagt
aatgccactttacataacgcagatgaaattgagcgtttaggtgtacatataggcgataca
gtggttatacgccgtgctggtgatgtgatcccgcaaattgtgagtgtgatggtagacaaa
cgccctgcagacagccgtgaaattatttttccaatccagtgccctgtttgtggctctgat
gttgaacgtgttgagggcgaagcggtcgcacgctgtactggcggcttaatctgtggtgca
cagcgtaaagaggctttaaagcactttgtttctcgccgagccatggatgttgacggcatg
ggcgataaaattatcgaccaattagttgagaaagagtatgtcaaaacaccggcagatttg
tatcaattaagtgcgggaaaattgactgggctagatagaatggggcctaagtccgctcag
aaagttatcgacgcattagaaaaatccaaacaaaccacattggcacgttttatttatgca
ttgggcattcgtgaagtgggtgaagcgaccgccgctaatcttgccgcacactacactact
cttgatgcggtgatgacagctgatgaagaatcgttgaaaacggtacaagacattggccat
atagttgccaagcatgtcgtgaatttctttcatgaagaacacaatcaaagtgtcatttca
gacttgataaacaaagcgaatatccattggcctgaagttaaagtgatcaatagcgcagaa
attgatagcccatttgcgggaaaaacagtggttttaaccggttcaatgaatatcctaacg
cgagatgaagctaaagataagcttgttgcattaggggcaaaagtagctggcagcgtttca
aagaaaaccgatatggtgatcgctggggaagccgctggctcaaaattggttaaagcgaat
gagctaggaattgaagtgattgatgaagaggagctaatacgtttgctgaatatctaa
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integrated database retrieval system
