Ectopseudomonas hydrolytica: NLY38_02190
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Entry
NLY38_02190 CDS
T08519
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf03030
DNA replication
phf03410
Base excision repair
phf03420
Nucleotide excision repair
phf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLY38_02190 (ligB)
03410 Base excision repair
NLY38_02190 (ligB)
03420 Nucleotide excision repair
NLY38_02190 (ligB)
03430 Mismatch repair
NLY38_02190 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phf03032
]
NLY38_02190 (ligB)
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_02190 (ligB)
Enzymes [BR:
phf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NLY38_02190 (ligB)
DNA replication proteins [BR:
phf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NLY38_02190 (ligB)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NLY38_02190 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLY38_02190 (ligB)
MMR (mismatch excision repair)
DNA ligase
NLY38_02190 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLY38_02190 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH
HHH_5
RecR_HhH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UTH32141
LinkDB
All DBs
Position
complement(453708..455387)
Genome browser
AA seq
559 aa
AA seq
DB search
MKRWIAPLLLPLIAQAEPCPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQ
ARERLQRWQQCFAPARQPLPEPLTGSAGPIAHPVPQTGLRKLSDAAIGEWIGSRDDLWIQ
PKVDGVAVTLVYRQGRLHQAISRGDGRHGQDWSARARQLPAVPTRLPEPLDLVLQGELYW
RLEDHLQARDGGAGARGKVAGMMARHELSDPDGAAIGLFVWDWPDGPASMDERLSQLQAL
GFADSQHYSKPIRSVEEARQWRQHWYRHRLPFASDGVVLRQGTRPAGARWQAEAPHWAVA
WKYPASQALAVVQAVDFRIGRSGRITPVLRLQPVDLDDRRISRVALGSVPTWKSLDVRPG
DQVAIRLAGLTIPRLDSVIWRSPHRAPVEVPRSADYHALSCWRSSPSCQQQFQARLAWLS
SKQGLALSGVGPGTWSSLPLQGLLDWLELDQAQLQSLPGIGPRRAAQLQQAFAQARDRSL
RQWLRALGAPPGFDAGGLDDWPSLIERQRDDWLRRPGVGPKGADRLLAFFSHPEVQRLGT
QLQQAGVAGFQPQAGPPRS
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgctggatcgctccgctcctcttgcccctcatcgcccaggccgaaccctgcccc
gactggccggacagccgcgcccaggtggaattcgcggcgctcagccaacagatcgcgcag
tgggatgacgcctaccacaaccagggccgctcgccgatagccgacgagctctacgaccag
gcccgcgagcgcctgcagcgctggcagcaatgcttcgcgcctgcacgacagcccctgccg
gaacccctcacaggcagcgcagggccaatcgcccaccccgtcccgcaaaccggtctgcgc
aagctcagcgacgcggcgatcggcgaatggatcggcagtcgcgacgacctgtggatccag
cccaaggtcgatggcgtggccgtcaccctggtctatcggcaaggccgcctgcaccaggcc
atcagccgtggcgacggccgccatggccaggactggagcgcacgcgcccgacagctgcct
gctgtcccgacgcggctgcccgagccgctcgacctggtgctgcagggcgagctgtactgg
cgcctcgaggaccacctgcaggcgcgcgatggcggcgccggagcgcgcggcaaggtggcc
ggaatgatggccaggcacgagctgagcgacccggacggcgccgccatcggcctgttcgtg
tgggactggccggacggcccggcgagcatggacgaacgcctgagccagctgcaggcgctg
ggtttcgccgacagccagcactacagcaagccgatccgcagcgtcgaagaagccaggcaa
tggcgtcagcattggtatcgccatcgcctgcccttcgccagcgatggcgtggtgctgcgc
cagggcacgcgccccgccggcgcgcgctggcaggcggaggccccgcactgggcggtggcc
tggaagtacccggccagtcaggcgctggcggtggtgcaggccgtggactttcgcatcggc
cgcagtgggcgcatcacgccggtgctacgcctgcagccggtcgatctcgacgacaggcgc
atcagccgcgtggccctcggctcggtcccgacctggaagagcctcgacgtccgccccggc
gaccaggtggcgatccgcctggccggcctgaccatcccacgtctggacagcgtgatctgg
cgcagcccgcaccgggcgccggtcgaggtaccgcgcagcgcggactaccatgccctcagc
tgctggcgcagcagcccgtcctgccagcaacagttccaggcccgtctggcttggctgagc
agcaagcaggggctggcgctgagcggggtgggcccgggcacctggagcagtctgcccttg
caggggctgctcgactggctggagctggaccaggcccagctgcagagcctgcccggcatc
ggcccgcgccgcgctgcacagctgcagcaggccttcgctcaggccagggaccgatcgctg
cggcaatggctgcgtgccctcggcgcacctccgggtttcgacgccggcgggctcgacgac
tggcccagcctgatcgagcgccagcgagacgactggctgcggcgccccggcgtcggcccc
aagggtgccgatcgcctgctggcgttcttcagccaccccgaagttcagcgcctgggcacg
caactgcagcaggccggtgtcgccggtttccagccccaagcaggcccgccacgcagctga
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