Ectopseudomonas hydrolytica: NLY38_09240
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Entry
NLY38_09240 CDS
T08519
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phf
Ectopseudomonas hydrolytica
Pathway
phf03030
DNA replication
phf03410
Base excision repair
phf03420
Nucleotide excision repair
phf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NLY38_09240 (ligA)
03410 Base excision repair
NLY38_09240 (ligA)
03420 Nucleotide excision repair
NLY38_09240 (ligA)
03430 Mismatch repair
NLY38_09240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phf03032
]
NLY38_09240 (ligA)
03400 DNA repair and recombination proteins [BR:
phf03400
]
NLY38_09240 (ligA)
Enzymes [BR:
phf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NLY38_09240 (ligA)
DNA replication proteins [BR:
phf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NLY38_09240 (ligA)
DNA repair and recombination proteins [BR:
phf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NLY38_09240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NLY38_09240 (ligA)
MMR (mismatch excision repair)
DNA ligase
NLY38_09240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NLY38_09240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UTH33466
LinkDB
All DBs
Position
2014499..2016859
Genome browser
AA seq
786 aa
AA seq
DB search
MTDAAQRISELRNELDAHNYRYYVLDEPSVPDAEYDRLFRELQALEAEHPELVTPESPTQ
RVGGEALSAFGEVRHEVPMLSLGNAFEEDDLRAFDRSVQSGLGLAGGDLFGGGAEVEYSC
EPKLDGLAVSLRYENGQLVRGATRGDGSTGEDISANVRTIRNVPLKLQGDGWPQVLEVRG
EVFMPKAGFEELNARQAEAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQVSG
ELPGTQVAMLQQLKAWGIPISRELKLAKGVEACLDYYRDIGQRRMSLAYDIDGVVFKVNN
IEDQQQLGFRARTPHWAIAHKFPAQEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV
ANATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVMAVVPERRPADARPVHIPEQCPVCGS
AVERTQLIKRSKGKASVSEGSVYRCVGRLSCQAQLKQAIIHFVSRRAMDIEGLGDKTIEQ
LVDEKLIGSPADLYKLTYEQIIGLEGFAEVSSNKLLAAIENSKRPSLARFIYALGIPDVG
EETAKVLARSLASLERVRQALPEVLTYLPDIGLEVAHEIHSFFEDAHNQQVISALLGECG
LELQDEGELSAEFSAVATLGGMLDKLNIPTVGPGAAQKLAERFGSLEGVLNGDWLDMRQA
LPERQAKAVREFFDETANAQRARAIEQQLREFGMHWESEKKVAEGLPLAGQTWVLTGTLE
VMSRDVAKGKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVLDEAQFLDQLK
AYGIEA
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgccgcccaacgtatttccgaactgcgcaacgaactggatgcgcacaactac
cgttactacgtgctggacgagccgagcgtgcccgacgccgagtacgaccgtctgttccgc
gagctgcaggcgctggaggccgagcatccggagctggtcacgcccgagtcgccgacccag
cgcgtcggtggtgaggcgctcagcgccttcggcgaggtgcgccatgaagtgccgatgctc
agcctcggcaacgccttcgaggaagacgacctgcgcgccttcgaccgcagcgtacaaagc
ggcctgggcctcgctggcggggacctgttcggcggcggcgccgaggtcgagtacagctgc
gaacccaagctcgatggcctggccgtcagcctgcgctacgagaatggccaactggttcgc
ggcgccacgcgcggtgatggcagcaccggcgaggacatcagcgccaatgtgcgcactatc
cgcaacgtgccactcaagctgcagggcgatggctggccgcaggtgctggaagtgcgtggc
gaagtattcatgcccaaggccggcttcgaggagctcaatgcacgccaggccgaggccggc
ggcaagaccttcgccaacccgcgcaacgccgccgccggcagcctgcgccagctcgacccg
aagatcaccgccagccgcccgctggagttctgctgctatggcgttggccaggtcagcggc
gagctgccgggcactcaggtggccatgttgcaacagctcaaggcctggggcattccgatc
agtcgcgagctgaaactggccaagggtgtggaggcctgcctggattactaccgcgatatc
ggtcagcggcgcatgagcctggcctatgacatcgatggcgtggtgttcaaggtcaacaat
atcgaggatcagcagcagctgggctttcgcgcgcgcacgccgcactgggccatcgcccac
aagttccctgcgcaggaagagctcaccgaactgctcgacgtggagtttcaggtggggcgc
accggtgcagtcaccccggtggcgcggctcaagccggtcaaggtggcgggcgtgatggtg
gccaacgccaccctgcacaatatggacgaagtggcgcgcctgggtgtgatgatcggcgac
acggtgatcatccgccgcgccggcgacgtgatcccgcaggtgatggcggtggtgcccgag
cgtcgcccggccgatgcgcggcccgtgcatatccccgagcagtgcccggtgtgcggctcg
gcggtggagcgcacgcaactgatcaaacgcagcaagggcaaggccagcgtcagcgaaggt
tcggtgtatcgttgcgtcggccgcctgagctgccaggcgcagctcaagcaggcgatcatc
catttcgtctcgcgtcgcgccatggatatcgaaggcctcggcgacaagaccatcgagcaa
ctggtggacgagaagctgatcggctcgccggccgacctgtacaaactcacttatgagcaa
atcatcggtctggaaggctttgccgaggtttccagcaacaagctgctggcagccatcgag
aacagcaagcggccgagcctggcgcgtttcatctatgccctcggcattcccgacgtgggc
gaggaaacggccaaggtgctggcccgttcgctggcctcgctggagcgtgtgcgtcaggcg
ctgcccgaggtgctcacctacctgccggatatcggcctggaagtggcccacgagatccac
agcttcttcgaggatgcgcacaaccagcaggtgatcagcgccttgctcggcgagtgcggc
ctcgagttgcaggacgaaggcgagctgagcgccgagttctccgccgtggccacgctcggc
ggcatgctcgacaagctgaacattcccactgtcggcccgggagcggcgcagaagctggcc
gagcgcttcggcagcctggaaggcgtactcaatggcgactggctggacatgcgccaggca
ctgcccgagaggcaggccaaggcggtgcgcgagttcttcgacgagacggccaacgcccag
cgtgcccgcgccatcgagcagcagctgcgcgagttcggcatgcactgggaaagcgagaag
aaggtcgccgaaggcctgcctctggccggccagacctgggtgctgaccggcaccctggag
gtgatgagccgcgacgtggccaagggcaagctggaaagcctgggtgccaaggtggccggt
tccgtctcggccaagacccactgcgtggtcgccggccccggtgccggctcgaagctggcc
aaggccagcgagctgggggtgaaggtgctggacgaagcgcagttcctcgatcagctcaag
gcctacggcatcgaagcgtag
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