Polaribacter huanghezhanensis: KCTC32516_02426
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Entry
KCTC32516_02426 CDS
T09192
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phg
Polaribacter huanghezhanensis
Pathway
phg03030
DNA replication
phg03410
Base excision repair
phg03420
Nucleotide excision repair
phg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KCTC32516_02426 (ligA)
03410 Base excision repair
KCTC32516_02426 (ligA)
03420 Nucleotide excision repair
KCTC32516_02426 (ligA)
03430 Mismatch repair
KCTC32516_02426 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phg03032
]
KCTC32516_02426 (ligA)
03400 DNA repair and recombination proteins [BR:
phg03400
]
KCTC32516_02426 (ligA)
Enzymes [BR:
phg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KCTC32516_02426 (ligA)
DNA replication proteins [BR:
phg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KCTC32516_02426 (ligA)
DNA repair and recombination proteins [BR:
phg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KCTC32516_02426 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KCTC32516_02426 (ligA)
MMR (mismatch excision repair)
DNA ligase
KCTC32516_02426 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KCTC32516_02426 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
HNOB
AphA_like
Motif
Other DBs
NCBI-ProteinID:
WKD87046
LinkDB
All DBs
Position
complement(2576449..2578506)
Genome browser
AA seq
685 aa
AA seq
DB search
MNEYKGYEILAPKTRFIIDNMTIQERIQKLREALNLHTYNYYVLDNATISDFEFDVKLKE
LEKLEKENPQFFDANSPTQRVGGEITKNFETVTHKNRMYSLDNSYSKEDLLDWEKRVHKV
LGTEDVEFTCELKYDGASINLTFENGQFVKAVTRGDGFQGDDVTANIRTIKSIPLVINGD
FVSDFEMRGEIILPLDGFNKMNKERVENGEEEYKNPRNTASGSLKLQDSAEVAKRPLDCL
LYQIVTSERKYKTHFESLENARKVGFKVPNTIALAKTIDDVFYFVNHWDTKRHDLPYETD
GVVIKVNNLEQQEELGYTAKAPRWAIAYKFKAEQVATILHEITYQVGRTGAITPVANLEP
VQLAGTIVKRASLHNADQIEKLDIRINDTVFVEKGGEIIPKIIAVDFTKRPQNSEPTKYA
THCPECNTALVRTEGDAKHYCPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKE
GLIENYADLYDLKVEQVIPLERMAEKSAQNMIEGIEKSKEIPFEKVLFALGIRFVGETVA
KKLAKYFKSIDHLMAADFETLIAVDEIGDRIAQSIIDFSNDLGNIQLINRLKLCGVKLEV
SAESLENQTDALGGKVFVVSGVFHQLSRNELKKAIEDNGGKVSSSISKKTDFVVAGDHMG
PSKKTKAEDLGVAIISEQDFIDMIS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
ttgaatgaatataaaggatacgaaattttagcaccaaaaacaagatttattattgataat
atgaccattcaagaaagaatacaaaaacttcgcgaagcgttaaatttacacacatataat
tattacgtgttagacaatgcaacgatttctgattttgagtttgacgtcaaattaaaagaa
ttagaaaagttagagaaagaaaatccgcagttttttgatgccaattctccaacacaaaga
gttggcggagaaatcaccaaaaactttgaaacggttacacataaaaatcgaatgtattcg
ttagacaattcgtattctaaagaagatttattagattgggaaaaacgagttcataaagtg
ctgggaacagaagatgtagaatttacttgtgaattaaaatacgacggagcttctatcaac
ttgacttttgaaaacggacagtttgtaaaagcggttacgcgtggcgatggttttcaggga
gatgacgttactgcaaatattagaactataaagtcgattcctttagtgataaatggagac
tttgtctccgattttgaaatgcgaggagaaattattttgccgttagatggattcaataaa
atgaacaaagagcgcgtagaaaatggggaagaagaatacaaaaacccaagaaacacggca
agcgggagtttaaaattacaagacagtgcagaagttgcaaaacgacctttagattgtttg
ttgtatcaaattgttacctcagaacgaaaatacaaaacacattttgagagtttagaaaac
gccagaaaagttggatttaaagttccaaatacaattgcattagcaaaaactattgatgat
gttttttactttgtaaatcattgggatacaaagcgtcacgatttgccgtatgaaacagac
ggcgttgttattaaagtaaataatttagaacaacaagaagagttgggttacacggcaaaa
gcaccacgttgggcaattgcatacaagtttaaagcagaacaagttgctacgattttacat
gaaatcacctatcaagttggacgaacaggagcgattactcctgttgcaaatttagaacca
gtgcagttagcaggaactattgtaaaacgggcttcgttacacaatgcagatcaaattgaa
aagttagatattagaattaatgatactgtttttgtagaaaaaggcggagaaataattccg
aaaattattgcggtagatttcacaaaacgtccgcaaaactctgagccaacaaaatatgct
acacattgcccagaatgtaataccgcattggtaagaaccgaaggagatgcaaaacattat
tgtccgaatgaatttggttgtgcgccacaaatcaccggaagaattcagcattttatcagc
agaaaagcgatggatattgatggtttaggaggagaaacggttgatttgttacgcaaagaa
ggattgatagaaaattatgcagatttgtatgatttaaaagtggagcaagtgattccgtta
gaaagaatggcagaaaaatcggctcaaaatatgattgaaggaatcgaaaaatcaaaagag
attccgtttgaaaaagtattgtttgctttgggaatccgatttgtgggtgaaaccgttgca
aaaaagttggcaaaatattttaaatcgattgatcatttaatggcagccgattttgaaact
ttaattgcggtggatgaaataggtgatcgaattgcacaaagcatcatcgatttttcgaac
gatttaggaaatattcagttgataaatcgattaaaattatgtggagttaaattagaagtt
tctgcagaaagtttagaaaatcaaacagatgcattaggcggaaaagtatttgtagtttct
ggagttttccatcaattatctagaaacgaactcaaaaaagcgattgaagataacggagga
aaagtaagttcgtcgatttctaaaaaaacagattttgttgtagctggagatcatatgggg
ccaagcaaaaaaacaaaagcagaagatttgggtgttgcaattatttctgaacaagatttt
attgatatgatttcgtag
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