Pseudopodoces humilis (Tibetan ground-tit): 102102664
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Entry
102102664 CDS
T02921
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
phi
Pseudopodoces humilis (Tibetan ground-tit)
Brite
KEGG Orthology (KO) [BR:
phi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phi03036
]
102102664 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
phi03400
]
102102664 (SMCHD1)
Chromosome and associated proteins [BR:
phi03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
102102664 (SMCHD1)
DNA repair and recombination proteins [BR:
phi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
102102664 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
Motif
Other DBs
NCBI-GeneID:
102102664
NCBI-ProteinID:
XP_005517290
LinkDB
All DBs
Position
Unknown
AA seq
2031 aa
AA seq
DB search
MAAVAGGGRAPRRPALLTPRGNGDRTVFVFDRRREQADPNEKVLSYSKDSYRAFRSAVCQ
AFGIPSDETFVITTTNRKEITEDNFSALVHEGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPATSQDVHELVLSKEDFEKKEKNKEAIYTGFIQNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNET
NTVTKEISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFIVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVRSDISSKRMQSPWTMYAA
IEWDGKTYKTGQLVKTIKTHPIFYGSIEKFYLYGDHDGDIFATGGEVQIALEPQALYAET
KIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFLVGLLELPFRIGVPF
SIPLELQDEFGHATHLTNRIRPILEASGLTLKHEDIPVATKCIIKGVIAKGCVNSCQGKN
FNLKITLPGLKEDTQVIKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
VQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQILKARFEVLNCRDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQVKHQDEISCVAGQVMNKLIFQMYDEAEREI
PITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDVRYCLITYLDEHVSLESAFTV
RPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKVTWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFIRVNLVAGSPAKLQLVD
WPELEKPVAVINGRELQRPLIVQLCDQWGNPTPEPNVKISLTKSNNLKLVPSNQQHKTDD
TGRANLGVFSIHAPRGEHILQLKASYNKTVLDCLVITINVLPDPEKPVCLNVKYDKSPSF
PAGSTFPDFMVSVLSEDDTIIKNINPARISMKMWEAQSSRVRTPIDVTTFSCSKVKDDKE
DGFFYFRDKVVPERVGTYIIQFSFAMDKTNMLNSEQIIVEVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHLMDEYNNHTGLDLDGRIIAKIKSPNEEDKEIPQFQGKVSTVE
FPLESGSAEINLVLAEDSPGRDSTEYILIFEPHLPALKKRLEPYCLSFMFYNDSKKQQLM
ATLTREKDQLSKSIDLYRKMFDTTNQLIAEIKCQVKEAETREAFLKNELKKHQIELPQAN
TIQYVDSLLKKKMLEQEGVMKQPRRTCTLPNYPKGNQDVLGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIFKKTLPDWSRPLPHLRNGRTFFRP
IGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQIDLLQQYRAAVIKLDNVN
KDLDLHLQSLNTPEMQKKKRELAEQEKSLKLVKQKLGMTPALSDKGAESLLQPIMLDISD
TPIPPKRMRRDTAKKLYSSEEWIFSSAHQQQQQVLQMAPSELNGTPRKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggtggcgggaggcggccgcgcacctcgcaggccggcgctgctgaccccccgc
ggcaacggcgaccgcaccgtgttcgtcttcgaccggcgccgggagcaggcggacccgaac
gagaaagtgctcagctacagcaaggacagctaccgcgcttttcgcagcgccgtctgccag
gcatttggcataccctctgatgaaacctttgttatcaccacaacaaataggaaggaaatt
acagaagataacttcagtgcgcttgttcatgagggagttactttgtatctgctacagtca
gttgatcaaatgttgcttttggcaaccaaggaacgaatcgactttctgccccactatgat
acacttgtcaaaagtggtatgtacgagtactacgccagcgagggccaaaatcctttgccg
tttgcccttgctgaattgattgacaattctctgtcagctacatctcaaaatactggtatt
cggagtatacagataaaattgttgtttgatgattcccaaggaaaaccagctgttgctgtg
attgataatggaagtggaatgacttctaagcagcttaacaactgggctgtatatagattg
tcaaagtttacaagacaaggtgactttgaaagtgatcattcaggatacgtacgccctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaagcaagca
gtgttcttcgtgggacaatctgccagaatgataagcaaacctgcaacatctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tatactggattcattcaaaacagaaagccatctgattctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttgg
acaaggcagctggcacatatctatcactattatatccatggaccgaaaggaaatgaaact
aataccgtaacaaaagaaataagccctttcaacaacatcgacattcagatttcaatgttt
gaaaagggaaaagtaccaaagattgtcaatctgagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagcagatagttttgaatttaaggcgcatgttgaagaagaaggc
atagtcgaaggcatcatccgttaccatcccttcttgtatgataaagaaacgtaccctgat
gacccatgttttccatcaagattaaatgatgatgatgatgacgactgttttatagtagaa
aaaggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaagattgatacca
tacacgactgtggaagattttgactggtgtgctcctccaaagaagagaggattggcacca
attgaatgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagctaaaggataagaataccctgttc
acgagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctctgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaata
actgtacgttctgatatatcatccaaaagaatgcagagcccttggacaatgtatgctgca
atagagtgggatggaaaaacttacaaaactggacagctggtgaaaactattaagactcat
ccaatattctatggaagcattgagaaattttacttgtatggggaccatgatggggatata
tttgccactggaggagaggttcaaattgctttggaaccacaggcattgtatgctgaaaca
aaaattattccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatac
atagaggatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaaggagat
gagttgttaccaaatgaaacaagatttgctggtacaccaataggagcattaagaatagaa
attttaaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaggttattctgcattcacctactgagaataaagaaatc
atttcccatatcagccagcatggaggcaagtggccatactggtttaaaaaaatggaaaat
cttcagaaacttggcaactactcgttgaaactgcaagtagtattgaacgaaagtaatgca
gacacttacgctggaaggcctctgccatctaaagtatttaaatttactattgtagagggc
aaaccagagaaatttttggtgggtctcttggagcttcctttccgaattggagtgcctttt
agtattcctttggaattgcaggatgaatttggtcatgcaacacacttgacaaatcgtatc
agaccaattctggaagctagtggattaacactgaagcatgaagacatacctgtggcaaca
aagtgtatcattaagggtgttatagccaaaggctgtgtaaatagttgccagggaaagaac
tttaatctgaagattactcttcctggtttgaaagaagatacacaagtcattaaaataaga
ttgcagcctggccctcctcgtcaattgaaagtaaaaccagattcagaaattctaaagata
gaaaatggtacagcttttccctttcaggttgaagtactggatgaatcaggaaatataaca
gtgcagccagagttaattgttcactgtaagtttttaggtgcttcagaccttcctgtgtat
tctgtggactgcagtaatggaggaacaaacattttgactggtccagttatacatgtacag
aatatcaagaaagaccagatactgaaagcaaggtttgaagtacttaattgcagagatgtg
ccaccagtggagaagattataaaacttcttcctagcagtcacgttgcaagactacaagtc
ttaagtatgaatggacaaaaagctcttcaggttaaacatcaggatgaaatcagctgtgtt
gctggccaagtcatgaacaaactcatatttcagatgtatgatgaagcagaaagggaaata
cccataactgcagctgctgcagaaaaaatcaaggttaactggacacctaaaattgacaga
gagttgttgatgcagggattattacctgatgtaaaagtaccaacttcagtaaaagatgta
cgttactgtctaattacgtaccttgatgagcacgtgtctttggagagtgcattcacagtc
agaccagttcctgatgaacccaagcacattaaatgtaaactaaaaggctcaaacacattg
cagatgggtgaagaactgcagagtgaaattgatgtaatgattacagatcagtttggaaat
caggttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactt
gataaatcaaatttgaaagtaacttggcaggaaagtactcagacaatgaaagtaaaaggt
attcgatataaaccctgtttactcggaagcaaagaactgtgctttgcttggcgtgaattt
tctgactttatcagagtgaatttagtagcaggatccccagctaaactgcagcttgtggat
tggccagagttagaaaagcctgttgcagtgattaatggtagagaattgcagaggcccctt
attgttcagttgtgtgatcagtggggaaatccaactcctgaacctaatgtcaaaatcagc
cttacaaagagtaacaacttaaagcttgttccttcaaaccagcaacataaaacggatgac
actggtagggctaacctgggagtttttagtattcacgcacctaggggagagcacatttta
cagcttaaagcctcatacaacaagaccgtattggattgtcttgtaatcacaataaatgtc
ctgcctgatcctgagaaacctgtttgcttgaatgtcaaatatgacaaaagtccttctttt
ccagcaggaagtaccttccctgattttatggttagtgttctttctgaagatgacaccatt
attaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagccgg
gttaggacaccaattgatgttacaacattcagctgtagtaaagtgaaggatgacaaggaa
gatggcttcttctacttcagagataaagtggttccagagagagtgggcacttacattatc
caattttcctttgcaatggataagacaaatatgctcaacagcgaacagattatagttgaa
gttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtt
tccaatgttcgagctcttaccagccgtacactggtcaaggatttatacctccatttaatg
gatgaatacaacaaccacactggacttgatctagatggcagaataatagcaaaaattaaa
agccccaatgaagaagataaagagatcccacagtttcagggaaaagtcagtacagtagag
tttccactggagagtggatcagctgaaattaatttagtgctggctgaagacagtcctgga
agagatagcactgaatatattcttatctttgaaccacatctgccagctttgaaaaaacgt
ttggaaccatactgtctctcatttatgttttacaatgattccaagaagcagcagctgatg
gcaacactgaccagggagaaagaccagttatctaagtccatagatctttacagaaagatg
tttgatactacaaatcagctcatagctgaaattaaatgtcaggttaaagaagctgaaaca
agagaagctttcctgaagaatgaactgaaaaagcaccaaattgaattaccacaggcaaac
acaattcagtatgtggattctcttcttaaaaaaaagatgttagaacaagaaggagtaatg
aagcagccaaggagaacttgtaccctcccaaactatccaaaaggcaaccaggatgttcta
ggcaagatcgcgcatttagctcaaatagaggataatgaagcagcaaaagttatctcttgg
cacctggcaagtgacatggactgtgtagtcacattgaccacagaagctgctcgttctatc
ttcgatgaaactcaaggtcgacaacaagtgctaccccttgattctattttcaagaagaca
cttccagattggagcagacctttacctcacttgagaaatggaagaaccttcttcagacct
attggaaatcctgtatttgccagagatctgttaacatttccagataacatagagcattgt
caaacagtgtttggtatgctcttgggtgatactatcataatagataacttggatgctgcc
aaccactacagaaaagaggttgtaaaaattacacactgccctaccttgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaaactcagaggaatggtatttggagcaccaatgcctaaactttactctactttctct
ggacagatagatcttcttcagcaataccgtgcagcagtgattaaacttgataatgtgaat
aaggaccttgatttgcatttgcagtcactgaacactccagaaatgcaaaagaaaaaacgg
gaacttgctgaacaagagaaaagcctcaagctagtaaaacaaaaattgggtatgactcct
gctttatcagataaaggtgctgaatcattacttcagcctataatgttagatatatctgac
actcccattcctcccaaaagaatgcgaagagatacagcgaaaaaattgtatagctcagaa
gaatggatcttctcttctgcacaccagcagcaacagcaagtgctgcaaatggccccttca
gaacttaatggaactccacgaaaaagaaaggcatag
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integrated database retrieval system
