Prevotella histicola: J5A62_05455
Help
Entry
J5A62_05455 CDS
T07498
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phis
Prevotella histicola
Pathway
phis03030
DNA replication
phis03410
Base excision repair
phis03420
Nucleotide excision repair
phis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5A62_05455 (ligA)
03410 Base excision repair
J5A62_05455 (ligA)
03420 Nucleotide excision repair
J5A62_05455 (ligA)
03430 Mismatch repair
J5A62_05455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phis03032
]
J5A62_05455 (ligA)
03400 DNA repair and recombination proteins [BR:
phis03400
]
J5A62_05455 (ligA)
Enzymes [BR:
phis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J5A62_05455 (ligA)
DNA replication proteins [BR:
phis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5A62_05455 (ligA)
DNA repair and recombination proteins [BR:
phis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J5A62_05455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5A62_05455 (ligA)
MMR (mismatch excision repair)
DNA ligase
J5A62_05455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J5A62_05455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
DNA_ligase_ZBD
RUBY_RBDX
GATase_6
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QUB83264
LinkDB
All DBs
Position
1:1350403..1352460
Genome browser
AA seq
685 aa
AA seq
DB search
MNEEIQNLVNQLNAASDAYYNGREELMTDYEWDAAFDKLKKLEEETGIVLADSPTQNVSA
DDVAGQKEEHEFPTLSLAKTKKVADLAKWAEGRPIWLSWKLDGLTLVATYDNGKLTKVVT
RGNGHIGTNITRLAPAIDGILPTIKYKGHLVIRGEAVISYPDFEQFNMESEEEYANPRNL
ASGSLTLKDINEVKERHLRWIPFTLVYVEEEIISWGERMAWLEHQGFKPVDRECIEQPNE
MNIQSVINLWTERVTGEQTSQSSDSSHKIVRFPYPVDGLVITYDDTAYAATGSVTGHHAT
RAGYAFKWQDESAETELDHVEWSCAASTISPVAVFLPVELEGTTVKRASLSNISECERLG
IGDKGTKIAVIKANKIIPKVINVIEQIGIFHIPETCPVCHSATEVVESEVSGTRTLHCTN
SHCPAKQLKKFGRFVSKEGMNIDGLSEQTVQKFINLGWVCEYADFFHLKDHAPELRTMEG
FGNKSVSNLLTAIEKARNVEARRLLFALNIPLVGQDVCNRLLSAYPLEELIKTATESISD
DVFSTIAGIGPEKSTSFVRWMKDEDNHAMLHNLLLELNISQQSSTPTGSSCQGLTFVVTG
DVHHYKNRNELKAYIESQGGKVTGSVSKSTNFLINNDVESTSGKNQKAKELSIPIISEDE
FIARFTLSNTENKDKKEENNEPSLF
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagaaatacagaatttagtcaaccagctcaatgctgcatcagatgcgtattat
aatggtcgtgaagaactcatgactgattacgaatgggatgcagcctttgacaagcttaag
aaattagaagaagaaacgggcattgtactggcagattcaccaacgcagaatgtctctgcc
gatgatgttgctggtcagaaagaggaacatgagttccccactctgtcactggctaagacc
aagaaagtagctgatctggctaaatgggcagaaggaagacctatctggctttcatggaaa
ttagatgggttgacactggtcgccacatatgataatggtaaactgaccaaggttgtcaca
cgtggcaacggccatataggtacgaatatcactcgcttagctcctgccattgacggcatt
ctccccaccattaaatacaagggacatctcgttatccgcggggaagcggtcattagctat
cctgatttcgagcaattcaacatggagtcagaagaagagtatgccaatcctcgtaacctt
gcatcaggttctttgacactaaaggatatcaatgaggttaaagaacgccatctacgttgg
atacctttcacacttgtttatgttgaggaagagatcatttcatggggagagcggatggca
tggctcgaacatcaaggctttaaacctgttgacagagaatgtatagaacaacctaacgag
atgaacatacagtctgtaatcaacctctggacagaacgtgttacaggcgaacaaacttcc
caatcatcggactcaagccacaaaatagtcagattcccctaccctgttgatggattagtc
atcacatacgatgacactgcatatgcagcaacaggctctgttacggggcatcatgctaca
cgtgctggctatgcctttaaatggcaagacgagagtgctgaaacagaattagaccatgtt
gaatggtcatgtgcagcatcaactatctcacctgtcgccgtatttcttcccgtagaactg
gaaggaactaccgtcaagcgtgcttctctcagtaatatctccgagtgtgaacgattgggt
attggtgacaagggaacaaagattgccgttatcaaagccaataaaatcattccaaaggtt
atcaatgtaatagaacaaataggaattttccacatacctgagacatgtcctgtctgccat
tcagcaacagaagtagttgaaagtgaggttagcggaacacgtactttacattgcacaaac
agccactgtcctgccaagcagctgaagaaattcggtcgtttcgtatcaaaggaaggtatg
aatatagatggactatctgaacaaactgtacaaaaatttataaacctaggatgggtttgt
gaatatgcagacttcttccacctcaaggaccatgctcctgaactgcgtactatggaggga
tttgggaataagagtgtcagcaatctattaacagctattgagaaagcacgcaatgtggaa
gcacgtcgactactgtttgctctcaacattccactcgtaggacaggacgtttgcaatcgt
ctgttatcagcttatccattggaggaacttatcaaaactgcaacagaaagtatctctgat
gacgtcttctcaaccattgctggtattggaccagagaaaagtacgagcttcgttcgctgg
atgaaggatgaagataaccacgccatgctacataatctgttgctcgaactaaatatcagt
caacaatcatcaaccccaacaggtagcagttgtcaaggattgacgtttgtcgttacaggt
gatgtacaccactataagaaccgcaacgaactaaaagcttacattgaaagtcagggtggt
aaggtcactggctctgtgtcaaaatccactaattttcttattaataatgatgtggaaagc
acctcgggtaagaaccagaaggcaaaagaactttctattcctatcatctctgaagacgaa
ttcattgctcgctttacactctctaatactgaaaacaaagataaaaaagaggagaacaat
gaaccttcactcttctaa
DBGET
integrated database retrieval system
