Guptibacillus hwajinpoensis: LC071_13590
Help
Entry
LC071_13590 CDS
T09276
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phj
Guptibacillus hwajinpoensis
Pathway
phj03030
DNA replication
phj03410
Base excision repair
phj03420
Nucleotide excision repair
phj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LC071_13590 (ligA)
03410 Base excision repair
LC071_13590 (ligA)
03420 Nucleotide excision repair
LC071_13590 (ligA)
03430 Mismatch repair
LC071_13590 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phj03032
]
LC071_13590 (ligA)
03400 DNA repair and recombination proteins [BR:
phj03400
]
LC071_13590 (ligA)
Enzymes [BR:
phj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LC071_13590 (ligA)
DNA replication proteins [BR:
phj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LC071_13590 (ligA)
DNA repair and recombination proteins [BR:
phj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LC071_13590 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LC071_13590 (ligA)
MMR (mismatch excision repair)
DNA ligase
LC071_13590 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LC071_13590 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_pol_A_CTD
Sas-5-like_implico
Motif
Other DBs
NCBI-ProteinID:
WLR58246
LinkDB
All DBs
Position
2680089..2682089
Genome browser
AA seq
666 aa
AA seq
DB search
MEEKQKRIEELRQLLNQYNYEYHVLDQPTVPDAEYDRMMNELINLEEENPELKTEDSPTQ
RVGGPPLEGFQKVEHRVPMLSLGNAFGEEDLKDFDRRVRDRIGENFSYVCELKIDGLAVS
LIYEDGVLVRGATRGDGTVGEDITQNLKTIPAIPLRLSENVSMEVRGEAFMPKPSFMKLN
EAREKNDQDLFANPRNAAAGSLRQLDPKIAASRNLSIFVYGVGTVEGREISSHSNDLDFL
KELGFKTNPEWKRCNTIDDVIDYIGGWSEKRPDLSYEIDGIVVKVDALNQQEELGFTAKS
PRWAIAYKFPAEEVVTQLLDIQLNVGRTGVVTPTAVLEPVLVAGTTVQRASLHNEDLIRE
KDIKIGDYVVVKKAGDIIPEVVSVLEDRRSGEEKAFSMPEKCPECDSDLVRLEEEVALRC
INPKCPAQLREGLIHFVSRNAMNIDGLGERVITQLFREELIHDVADIYQLTHDQLIELER
MGEKSVSNLLEAISVSRNNSLEKLLFGLGIRHVGAKAAKTLAQQFGSMDSIVQAKIEDLE
AINEVGQKMADSVVRYFQNEEVHELIEELKEAGVNMTYKGPKPVAVEDIDSVFAGKTIVL
TGKLEQLSRGEAKKKLEEQGAKVTGSVSKSTDLVIAGEDAGSKLEKAESLGIDVWSENRF
LEELNE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagcaaaagcgcatcgaagagcttcgtcagctcttaaatcagtacaattac
gagtaccacgttctagatcagccgaccgttcctgatgccgagtatgatcggatgatgaat
gaattaattaacctggaagaagagaatcctgaacttaaaacggaagattctccaactcag
cgcgtcggtggaccgccgcttgaaggctttcaaaaagttgaacacagagtacctatgcta
agccttggtaatgcttttggtgaagaggacttgaaggacttcgaccgacgtgtacgtgat
cgaattggcgaaaacttttcgtatgtatgcgagttaaaaatagacggtcttgccgtttca
cttatttatgaagatggagttcttgtgcgtggagccacacgtggggatgggacggttgga
gaggacattactcagaatttgaaaaccattccagctatcccacttcgtttaagcgagaat
gttagcatggaggtgcgtggtgaggcgttcatgccaaagccatccttcatgaaattaaat
gaagcacgtgagaagaacgatcaggatttatttgcaaatcctcgaaatgcagcggctggt
tctcttcgccagcttgatccaaagattgctgctagccgcaacttgtctatttttgtatac
ggtgtaggtacggttgaaggcagggaaattagttcacattcaaatgaccttgattttctc
aaagagctaggattcaaaaccaatccagaatggaagcgatgtaacacgattgatgatgtt
attgattacatcggtggttggtcagagaaacgtcctgatctttcatacgagatcgatggg
attgttgtgaaagtagatgccctcaatcaacaagaggagctaggatttactgcgaaaagt
ccacgatgggccattgcatacaagtttcctgctgaagaggttgtaacgcagctcttggat
attcagcttaatgtgggcagaactggtgtcgtcactcccactgctgttttagaaccagta
ctcgttgctgggacaaccgtgcagcgagcatctcttcataatgaggatctgattcgtgag
aaggatattaaaattggagactatgtcgttgtgaaaaaagcaggagacattattcctgaa
gtcgtttcagttcttgaagatcgtcgttcaggtgaagaaaaagcattttctatgcctgaa
aagtgtcctgaatgtgatagtgatctcgttcgattagaagaagaggtcgcacttcggtgc
attaatccaaaatgtccagctcagctccgtgaaggactcattcatttcgtttcacgcaat
gcaatgaatattgatggactaggtgaacgggtgattactcagctgtttcgagaggaatta
attcatgatgtagcagatatctatcagctgacgcacgatcaacttattgagttagagcga
atgggtgaaaagtcagtctccaaccttcttgaggcgataagcgtctcaaggaataattca
ttagaaaaactgttgtttggtcttgggatacgccatgtgggtgcaaaagctgcgaaaact
cttgcacaacaatttggctctatggacagtattgttcaagcaaaaatagaagatcttgaa
gcaattaatgaagtgggacagaaaatggctgattctgttgtgcgatattttcaaaacgaa
gaagtgcatgaactaattgaagaattaaaagaagctggcgttaatatgacctataaagga
cctaagccagttgcggtagaagacattgattccgtgtttgcgggcaaaacaattgtactc
actggtaaattagaacagttgagtcgcggggaagcaaagaagaagcttgaagaacaaggc
gcaaaggtgacaggtagtgtaagtaagagcacagaccttgttattgcaggggaagatgct
ggttctaagcttgaaaaggcagagtcccttggcattgacgtgtggagtgagaacaggttc
cttgaagagttaaacgaatga
DBGET
integrated database retrieval system
