Paenibacillus hunanensis: SK066_03780
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Entry
SK066_03780 CDS
T09633
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phk
Paenibacillus hunanensis
Pathway
phk03030
DNA replication
phk03410
Base excision repair
phk03420
Nucleotide excision repair
phk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SK066_03780 (ligA)
03410 Base excision repair
SK066_03780 (ligA)
03420 Nucleotide excision repair
SK066_03780 (ligA)
03430 Mismatch repair
SK066_03780 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phk03032
]
SK066_03780 (ligA)
03400 DNA repair and recombination proteins [BR:
phk03400
]
SK066_03780 (ligA)
Enzymes [BR:
phk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SK066_03780 (ligA)
DNA replication proteins [BR:
phk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SK066_03780 (ligA)
DNA repair and recombination proteins [BR:
phk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SK066_03780 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SK066_03780 (ligA)
MMR (mismatch excision repair)
DNA ligase
SK066_03780 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SK066_03780 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
HHH_3
DNA_ligase_ZBD
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WPP42098
LinkDB
All DBs
Position
955553..957577
Genome browser
AA seq
674 aa
AA seq
DB search
MDPMKEMEKLVADLNNYNYHYYTLDEPLVEDKDYDAQYDRLLQLEQESGMVLPDSPTQRV
GGELLKGFTPHRHLAPLWSLDKAQNLEKLSSWHTRARKLIGDYNEKNPDQPLPEPSYAVE
LKFDGLTLNLTYENGRLVQASTRGNGVVGEGILEQVKTIRSVPLSIPFTEGKLEVQGEGI
MHLSVLEAYNAAATEKDKLKNARNAAAGALRNLDPRTTAKRKLNAYFYNIGYTEGVRFEN
QQEMMQFLRDNHFRVNPAVSYFDNFDDVIARLEEIQQERSGLDYLIDGAVVKLTDMRTRE
VLGYTDKFPRWAIAYKFEAEETSTILESVSWNVGRTGKITPLARVEAVELAGVTVQNCTL
NNIGDIERKNLKFALGTRVYIRRSNDVIPEILGKVSEENDGEEIIFPEQCPSCGFPLEQR
GAHLFCNNRFGCEPQIVARITHFASRDAMDIETFSIKTATQLHNELNVREPADLYTLQFD
DLSKLERFGERKANNLLQAIEDSKTRDLASFLYALGIPNTGKTTTRMLAEHYRDLDKIRT
ATVEELVELPDVGSIVAESIVEFFADPFMLAGIDKMLNLGVQPQVPEALAVIVSEDSYFN
GKTVVLTGTLQTMTRDEAALRLEQLGAKVTGSVSKKTDIVIAGEKAGSKLTKAQELGLEI
IQDEEQLKRLLELE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatgaaggaaatggagaagctagtcgctgatctgaataattacaattatcat
tactacacactggacgagccgttagttgaggacaaagactatgatgctcaatacgatcgt
ttgctacagctggagcaggaaagtgggatggtattacctgattcgcctactcagcgtgtt
ggcggtgagctgctcaagggattcaccccgcatcgtcatctggcgccactgtggagcctg
gataaagcgcaaaatctcgaaaagctatccagctggcatacgcgtgctcgcaagctaatc
ggtgattataacgaaaagaatccggatcagccgctacccgagccttcctatgcggtagaa
ttgaagtttgatggactcacccttaatctaacttatgaaaatggtcgactcgtacaggca
tccacacgcggaaatggtgtcgttggcgaagggattttagagcaggtgaagacgattcgc
tctgtaccactatcgattccatttacagaaggcaagcttgaggtgcagggagaggggatc
atgcacctgtctgtacttgaagcttataatgctgctgcaactgaaaaagataagctcaaa
aatgcgcgtaatgctgccgctggggcactacgcaatctggatccgcgtacgacagccaag
cggaagctgaatgcttatttttataacatcggctatacagaaggagttcgttttgaaaat
cagcaggagatgatgcaatttttacgggataatcatttccgtgtgaatccggctgtatcc
tatttcgataattttgatgatgtgattgctcgcttggaagagattcagcaggagcgtagc
ggtttggattatctgatcgacggagctgtggtaaagctgactgatatgcgtactcgtgag
gtactggggtatacagataagttccctcgctgggcgatcgcgtataaattcgaagctgaa
gaaacgagtaccattttggagtcggtatcctggaatgttggacgtacagggaaaatcaca
ccgttagcacgtgtggaggcagtcgagctggcaggggtaacggttcagaactgtacactc
aataatatcggcgatattgaacgtaaaaatctaaaatttgctcttggcacaagagtctat
attcgacgctccaacgatgtaatcccagagattctgggtaaagtgtcagaggaaaatgac
ggagaagagattatcttcccagaacaatgtccatcctgcggcttcccgttggagcagcgt
ggtgctcatctgttctgtaacaatcgctttggctgtgaaccgcaaattgtagctcggatt
acgcatttcgcttcacgagatgcaatggatatcgagacctttagtattaagacagcaacg
cagctgcataatgagctgaatgtgcgtgagccagccgatctgtacacgttgcaatttgac
gatctatccaagctggagcgctttggcgagcgcaaggccaataatttattacaagcgatc
gaagatagcaaaacccgtgatctcgcttcgttcctgtatgcattgggaattccgaataca
ggtaaaacgacaacacggatgctggcagagcattatcgtgatctggataaaatccgtaca
gctactgtagaggagctagttgagctaccggatgtaggctcgattgtagcggagagtatt
gttgagtttttcgctgatccatttatgctggctggcattgataaaatgctaaaccttggc
gtacagccgcaagttccagaagcacttgccgttatcgtgagtgaagattcctattttaat
ggcaaaaccgtagtgctaaccggcacattgcagacgatgacgcgcgatgaggcagcatta
cgcctggaacagctcggtgccaaagtaaccggcagtgtatccaaaaagaccgatatcgtt
atcgctggcgaaaaagcaggcagcaagctgacgaaagcacaggagctcggtcttgagatc
attcaagacgaggagcagctgaagcgactattggaactggagtaa
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