Pelagibacterium halotolerans: KKY_1985
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Entry
KKY_1985 CDS
T01645
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phl
Pelagibacterium halotolerans
Pathway
phl03030
DNA replication
phl03410
Base excision repair
phl03420
Nucleotide excision repair
phl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KKY_1985
03410 Base excision repair
KKY_1985
03420 Nucleotide excision repair
KKY_1985
03430 Mismatch repair
KKY_1985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phl03032
]
KKY_1985
03400 DNA repair and recombination proteins [BR:
phl03400
]
KKY_1985
Enzymes [BR:
phl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KKY_1985
DNA replication proteins [BR:
phl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KKY_1985
DNA repair and recombination proteins [BR:
phl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KKY_1985
NER (nucleotide excision repair)
GGR (global genome repair) factors
KKY_1985
MMR (mismatch excision repair)
DNA ligase
KKY_1985
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KKY_1985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
MazE_antitoxin
Zn_Ribbon_TF
GreA_GreB_N
Motif
Other DBs
NCBI-ProteinID:
AEQ51995
UniProt:
G4RFF7
LinkDB
All DBs
Position
complement(1959877..1962021)
Genome browser
AA seq
714 aa
AA seq
DB search
MSIDLPVDELSLEDAKSELDRLHRLIEKADRAYYQDDAPDISDAEYDAARRRYMEIETRF
PELRRADSLSERVGAAPVDGFAKVRHAVPMLSLGNAFDDADVADFVQRGRKFFERDKNLE
LAFTAEPKIDGLSASLRYENGIFVRGATRGDGTEGEDITENLKTIADVPKKLSGAGWPDV
LEVRGEVYMTHADFAALKKRSAEEGGQDYVNPRNTAAGSLRQKDPSVTAKRNLKFFAYAW
GQVSAPIADTQYEAVQRLGEWGFVINPLMIRTTSVEDLLGHYRSIEEQRATLGYDIDGVV
YKLDRLDLQQRWGFVARAPRWAIAHKFPAEQATTILHKIDIQVGRTGTLTPVARLQPVTV
GGVVVENATLHNEDYIAGRDSFGAEIREGYDIREGDTVIVQRAGDVIPQIVAVVPDKRPA
QSKPFEFPHVCPECGSEAVREVNPKTGKLDARRRCTGELICPAQAVENLKHFVSRNALDI
DGLGDKQIAAFHAEGRIREPADIFRLAEEDTRSLKKLKDQEGWGETSAKKLFAAIDARRE
PELDRFIFALGIRHVGESTAALFAKTFSNFEAFREMAFRAGKGDAEAYNTLLGIDGVGDT
VVQSVTGFFANERNEKAIDALLAEVKPKDYVVSISADSAVAGKTVVFTGSLERMSRTEAK
AMAERLGAKVSGSVSAKTDLVVAGPGAGSKLKQAESLGVEVISEDEWFERTGQA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
gtgagtatcgatttgccggtggacgagctgtcgctggaagacgcaaagagtgaactcgac
cgcctgcaccggctgatcgaaaaggccgacagagcctattatcaggacgatgcgcccgat
atttctgacgccgagtatgatgccgcgcggcggcgctatatggaaatcgaaacgcggttt
cccgaattgcggcgcgccgattccttgtcggagcgcgtgggcgcggcgccggtcgacgga
tttgccaaggtgcggcatgcggtgccgatgctgtcgctgggcaatgcattcgacgatgcg
gatgtcgccgattttgttcagcgcgggcggaaatttttcgagcgcgacaaaaatctggaa
ctggcgtttacggcggagcccaagattgacgggctgtcggcctcgcttcgttatgaaaac
gggattttcgtgcgcggcgcgacaagaggggatgggaccgagggcgaggacatcaccgaa
aacctcaagaccatagccgacgttcccaaaaagctttcgggcgcggggtggcccgacgtg
ctcgaggtgcgcggcgaagtttacatgacccatgccgatttcgcggcgctcaagaaacgc
tctgcggaagagggcgggcaggattatgtcaatccgcgcaacacggcggcggggtcgctg
cgtcagaaggacccttcggttaccgccaaacggaacttgaagtttttcgcctatgcctgg
ggacaggtcagcgcgccgattgccgatacgcagtatgaggcggtgcaaaggctgggcgag
tggggctttgtcatcaatccactgatgatccgcaccacaagcgttgaagacctgctcggt
cattaccggtccatcgaagaacagcgcgcgacgctgggctatgacatcgacggggttgtg
tacaagctcgacaggctcgatctgcagcagcgctgggggttcgtggcgcgggcgccgcgc
tgggcgatcgcgcacaaatttcccgccgagcaggcgacgacaatactgcacaagatcgat
attcaggtggggcggacgggtacgctgacgcctgtcgctcggctgcagccggtgacggtg
ggcggcgtggtggtggaaaacgcgacgctgcacaatgaggattatatcgcgggacgcgac
agcttcggggccgagattcgcgaggggtacgatatccgcgagggcgacacggttatcgtg
cagagggccggggacgtgatcccgcagatcgtcgctgtggtgcccgacaagcggccagcc
caatccaagccgttcgagtttccccatgtctgtcccgaatgcgggtcggaggcggtgcgc
gaggtcaatccgaaaaccggaaagctcgatgcgcggcggcggtgtacgggggagctgatc
tgtcccgcgcaggcggtcgagaatttgaagcatttcgtttcccgcaatgcgctggacatc
gacgggttgggggataagcagatcgccgccttccacgcggaagggcggatcagggagccg
gccgatatcttcaggctggccgaagaggacacaaggagcttgaaaaagctcaaggatcag
gaggggtggggcgagacctccgccaaaaagctttttgcggccatcgacgcgcggcgtgag
ccggaactggaccggttcattttcgcgctcggcatccgccatgtgggtgagtccacagcg
gcgctttttgccaagacgttctcgaacttcgaagcatttcgggaaatggctttccgggcc
ggaaagggcgatgcggaagcctataacacgttgctggggatcgatggtgtcggcgacacc
gtcgtgcaatcggtcacgggcttttttgccaatgagcgcaacgagaaggccatcgacgcg
ctgctcgccgaggtgaagccgaaagactatgttgtcagcatttccgctgatagcgcggtg
gcaggcaagacggtcgtgtttaccggcagtttagagcgcatgtcgcggaccgaagccaag
gcgatggccgagcggctgggcgccaaggtttcaggttcggtttcggccaagaccgatctc
gtggtggccgggccgggcgcgggcagcaagctcaagcaggcagagagcctgggggtcgag
gttatctcggaagatgagtggttcgagaggacagggcaggcatga
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