Phycisphaera mikurensis: PSMK_24420
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Entry
PSMK_24420 CDS
T01800
Symbol
nth
Name
(GenBank) DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
phm
Phycisphaera mikurensis
Pathway
phm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSMK_24420 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phm03400
]
PSMK_24420 (nth)
Enzymes [BR:
phm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PSMK_24420 (nth)
DNA repair and recombination proteins [BR:
phm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PSMK_24420 (nth)
Prokaryotic type
PSMK_24420 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
EndIII_4Fe-2S
HHH
Motif
Other DBs
NCBI-ProteinID:
BAM04601
UniProt:
I0IH63
LinkDB
All DBs
Position
2897802..2898482
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AA seq
226 aa
AA seq
DB search
MADRGLRATAQPAKDRARARRLYAKLRAAYPDARCDLLHDSPFQLLVATILSAQCTDAAV
NRATPALFARFPDPAAMAAAEPTDVEPFVKTCGFFRAKARNLVAAARVVEKEFGGRVPET
MDGLLRVPGAARKTANVVLGNAFGKPAGVTVDTHVGRISVRLGLVEADPKNAIAIERDLA
GLLPKKDWTHFSHVLIWHGRATCRAQKPRCGDCVVRRSCPRIGLVA
NT seq
681 nt
NT seq
+upstream
nt +downstream
nt
gtggctgatcgcggactgcgagcgacggcccagccggcgaaggaccgcgcccgcgctcgg
cggctctacgcgaagctccgggcggcgtaccccgacgcgcggtgcgacctgctgcacgac
tcgccgttccagctgctcgttgcgacgatcctctcggcgcagtgcaccgacgccgcggtc
aaccgggcgacgccggcccttttcgcccgcttcccggatccagccgcgatggccgccgcc
gagccgacggacgtcgagcccttcgtgaagacctgtgggttcttccgcgcgaaggcccgg
aacctcgtggccgccgcccgcgtcgtcgagaaggagttcggcggccgggttcccgaaacg
atggacggcctgctgagggtgcccggtgccgcgcggaagaccgccaacgtggtgctgggc
aacgccttcggcaagcccgccggcgtcaccgttgacacccacgtcggccgcatcagcgtc
cgcctcggcctcgtcgaagccgacccgaagaacgcgatcgccatcgagcgcgacctcgcc
gggctgctgccgaagaaggactggacgcacttctcccacgtgctgatctggcacggccgg
gcgacctgccgggcgcagaagccgcggtgcggcgactgcgtcgtgcgacgctcctgcccg
cggatcggcctggtggcgtga
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