Phycisphaera mikurensis: PSMK_26900
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Entry
PSMK_26900 CDS
T01800
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phm
Phycisphaera mikurensis
Pathway
phm03030
DNA replication
phm03410
Base excision repair
phm03420
Nucleotide excision repair
phm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSMK_26900 (ligA)
03410 Base excision repair
PSMK_26900 (ligA)
03420 Nucleotide excision repair
PSMK_26900 (ligA)
03430 Mismatch repair
PSMK_26900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phm03032
]
PSMK_26900 (ligA)
03400 DNA repair and recombination proteins [BR:
phm03400
]
PSMK_26900 (ligA)
Enzymes [BR:
phm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSMK_26900 (ligA)
DNA replication proteins [BR:
phm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSMK_26900 (ligA)
DNA repair and recombination proteins [BR:
phm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSMK_26900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSMK_26900 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSMK_26900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSMK_26900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Endonuc_Holl
Motif
Other DBs
NCBI-ProteinID:
BAM04849
UniProt:
I0IHW1
LinkDB
All DBs
Position
3207367..3209787
Genome browser
AA seq
806 aa
AA seq
DB search
MADAADGAARRIDHLREELRRHNRLYYVEARQEVSDAVYDAMLRELADLEAEHPELADPD
SPTARVGGEPIAGFETVEHAVPMRSIDNTYDREELRAWHERVVRRLTEAGETATPALFFE
PKIDGVALSLVYEHGRLVRAVTRGDGTRGDDVTHNARQVASIPLVLGGTPPAVLEVRGEV
FLPHAAFAAANAAKQRRGEELFANPRNTTAGAMKQKDPAKVLPGLRFVAHGRGRVEPPDA
FAGQAAFLAACAGFGLPPTPGTAAVPGFEEAWERVEALRAGRRALDFETDGAVLKVDDFG
LQGLLGSTSKAPRWCVAFKYPAERATTRLLEVEVQVGKTGKLTPRARMEPVLVAGTTVTY
ATLHNFGELTRRDVRVGDTVVIEKAGEIIPQVIEPVLAERPADAQPVVPPAACPVCGTAA
RPEYGGEAEGSAEEESGRFCPNPSCPAQFRERLIHFAGRRQMDIEGLGEKMVDALLGLGS
GFLATLPDLYRLHEHRDVLRHVAGIGSAAALAAEQRERFGKKPLKSPPTHTRLDALLGGI
ERSKSRGLAAVLSGIGIRGVGHAVARDLAGWAGDVDRLVGADPLTLTDALSEADPQRAEE
QIRSYADAAEALLAALKTETASVALAGRDPAAVGTAAFLREHRSLLKLGARFGSARIDRV
AAALPTVAEAQAAGVSGVVDALRTPGVVAANVAAFFASDRGRELVAALRERGVVLEAERP
PASAAPPAAAVAGKKIVLTGRLERFTRPELTDLLRARGAEVSSAVSSKTDLLIAGEAAGS
KRAKALKLGVTIWTEAELLAAVPGLA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcggctgacggagcggcacgaaggatcgaccacctccgcgaggagctgcgt
cgccacaaccggctctactacgtcgaggcccggcaggaggtgtctgacgcggtctacgac
gcgatgctccgggagctggcggacctcgaggcggagcaccccgagctggcggatcccgat
tctccgacggcgcgggtgggcggcgaaccgatcgccggcttcgagacggtggagcacgcc
gtgccgatgcggagcatcgacaacacctacgaccgggaggaactgcgggcttggcacgag
cgggtcgtgaggcggttgaccgaggcgggcgagacggcgacgccggccctgttcttcgag
ccgaagatcgacggcgtggcgctctcgctggtctacgagcacgggcggctggtgcgggcg
gtgacgcgcggagacggcacccggggcgacgacgtcacccacaacgcgcgccaggtggcg
tcgatcccgctcgtgctcgggggcacgccgccggcggtgctggaggtgcggggcgaggtc
ttcctgccgcacgccgcgttcgccgcggcgaacgcggcgaagcagcggcggggcgaggag
ctcttcgcgaacccgcgcaacacgaccgcgggcgcgatgaagcagaaggatccggcgaag
gtgctgccgggcttgcggttcgtcgcccacggcagggggcgggtggagccgcccgacgcc
ttcgccgggcaggccgcgttcctcgccgcctgcgccggcttcgggctgccgccgacgccc
ggcacggccgccgttcccggcttcgaggaggcgtgggagcgggtggaggccctgcgggcc
ggccggcgcgccctcgacttcgagaccgacggcgccgtgctcaaggtcgacgacttcggg
ctccagggcctgctgggctccacgagcaaggcgccccgctggtgcgtcgcgttcaagtac
cccgccgagcgtgcgaccacgaggctgctcgaggtcgaggtgcaggtcggcaagaccggc
aagctcacgccgcgggcccgcatggagcccgtgctcgtcgccggcaccaccgtgacctac
gcgaccctgcacaacttcggcgagctgacgcggcgggacgtccgggtgggcgacacggtg
gtcatcgagaaggccggcgagatcatcccgcaggtcatcgagccggtgctcgccgagcgg
cccgcggacgcgcagccggtggtgccgccggcggcgtgcccggtgtgcgggaccgcggcc
cggccggagtacggcggcgaagccgagggcagcgccgaggaggagtccggccggttctgc
cccaacccctcctgccccgcccagttccgcgagcggctgatccacttcgccggccgccgg
cagatggacatcgaaggcctcggcgagaagatggtcgacgcgctgctgggcctcggatcg
ggcttcctcgcgaccctgcccgacctctaccgcctccacgagcaccgcgacgtgctgcgg
cacgtcgccggcatcggcagcgccgcggcgctcgccgccgagcagcgggagcgcttcggg
aagaagccgctgaagagcccgccgacgcacacgcggctcgacgccctgctcggagggatc
gagcggtccaaaagccgcgggctcgccgcggtgctctcgggcatcggcatccgcggcgtc
gggcacgccgtcgcgcgggacctcgcgggatgggccggggacgtggaccggctggtcggc
gccgacccgctgacgctgaccgacgccctaagcgaggccgacccgcagcgggccgaggag
cagatccgctcgtacgcggacgccgcggaggcgctgctggcggcgctcaagaccgagacc
gcaagcgtcgccctggcgggccgcgaccccgccgcggtcggcaccgccgctttcctgcgc
gagcaccgctcgctgctcaagctgggggctcgcttcggctccgcccgcatcgaccgggtc
gccgcggctctgcccaccgtcgccgaagcgcaagccgccggcgtgtccggcgtcgtcgat
gcgctccgcacgcccggggtggtggccgccaacgtcgccgccttcttcgccagcgaccgc
ggccgcgagctggtcgccgctctccgcgagcgcggggtcgtgctcgaggcggagcgtccg
cccgcctccgccgccccaccggccgcggccgtcgccgggaagaagatcgtgctcaccggc
aggctcgagcgcttcacccgccccgagctcaccgatttgctccgggcacgcggcgccgag
gtctcctccgccgtcagctccaaaacggacctgctcatcgccggcgaagccgccggcagc
aagcgggcgaaggcgctgaagctgggcgtgacgatctggaccgaggcggagctgctcgcc
gcggtgcccggcctcgcctga
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