Paenalcaligenes hominis: PAEH1_05245
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Entry
PAEH1_05245 CDS
T04704
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phn
Paenalcaligenes hominis
Pathway
phn03030
DNA replication
phn03410
Base excision repair
phn03420
Nucleotide excision repair
phn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PAEH1_05245 (ligA)
03410 Base excision repair
PAEH1_05245 (ligA)
03420 Nucleotide excision repair
PAEH1_05245 (ligA)
03430 Mismatch repair
PAEH1_05245 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phn03032
]
PAEH1_05245 (ligA)
03400 DNA repair and recombination proteins [BR:
phn03400
]
PAEH1_05245 (ligA)
Enzymes [BR:
phn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PAEH1_05245 (ligA)
DNA replication proteins [BR:
phn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PAEH1_05245 (ligA)
DNA repair and recombination proteins [BR:
phn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PAEH1_05245 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PAEH1_05245 (ligA)
MMR (mismatch excision repair)
DNA ligase
PAEH1_05245 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PAEH1_05245 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AQS51129
UniProt:
A0A1U9JZI5
LinkDB
All DBs
Position
complement(1030754..1032805)
Genome browser
AA seq
683 aa
AA seq
DB search
MYVKQRLEELKEQLHFHNYRYYVLDQPLIADAQYDALLRELQQIEAAHPEWVTADSPTQR
VGAAPVSAFTTVAHRRPMLSLGNVFDEEELYAFDKRIADLLRAEGVIQNQAIEYNAEYKF
DGLAVSLRYENGLLVQGATRGDGVTGEDITSNVRTISSIPLRLQGEAAHWPAVLEVRGEV
LMHRADFEALNQAQLRRGEKIFVNPRNAAAGSLRQLDPRITAQRPLRFFAYGWGEIQVQG
TAPHTEPYPTQSAMLDWLRQLGFAVDEHRRVLHGAAALQQFYVHTEQNRAELPYEIDGVV
YKVNVLAQQELLGYVARAPRFAVAHKFPAQEMTTKLLSIDVQVGRTGAITPVARLEPVFV
GGVTVTNATLHNEDEIRRKDVRAGDTVIVRRAGDVIPEVVAPIIELRPEQTELFVFPNQC
PVCGSAIERPMDEAIARCTGGLVCAAQRKQSLEHAVSRKALDVDGLGTKLIEQLVDANRV
KNLADLFTLTQLELSTYPRMGAKSAGNVVLALEQAKNPPLARFIYALGIRHVGEATAKAL
ADHFVHLARLVQANEEDLLQIDDVGPVVAAEIVNFFAEPHNRDVLGQLEQVGVVPIEPDV
QANRVAVTPFSNKTIVLTGTLPTLSRTEAQALIEQGGGKVTGSVSKKTDFVVAGSEAGSK
LTKAQSLGITILNEAQFLELLRS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atttacgtgaaacaacgcttagaagaactgaaagaacaactgcattttcataattaccgc
tactacgttttagatcagcctttaattgctgatgctcagtacgacgccttgttgcgcgaa
ctgcagcaaatcgaagccgctcatcctgaatgggttaccgccgactcacccacgcaacgt
gtgggggcggcaccggtttcagcctttaccaccgtcgcccatcgtcgccctatgttgtct
ttgggtaatgtgtttgacgaagaagagctatacgcgtttgataaacgcatagctgatctt
ttgcgtgccgaaggagtcattcaaaaccaagccattgaatacaatgccgagtataagttt
gacggcttagcggtcagcttacgctacgaaaatggtttattagtacagggtgcaactcga
ggcgacggggtgactggcgaagatattacgtcgaatgtacgtacaattagctcgatccca
cttcgccttcaaggcgaggcggcgcattggcctgcggtgcttgaggtgcgtggcgaagtc
cttatgcatcgggctgattttgaggccttaaatcaagcgcaattacgtcgtggggaaaaa
attttcgtcaatcctcgtaatgctgctgcaggcagtttgcgacaattagacccacgtatt
actgctcaacgccctttacggttttttgcttacggatggggcgaaatacaagtccaagga
actgccccacatactgaaccgtatcctacccaatcggctatgctggactggctacgtcaa
ttaggctttgctgtggatgagcatcgacgtgtgctgcatggcgccgccgccttacagcaa
ttttatgttcacactgaacagaaccgtgccgagttgccctatgaaattgatggggtggtg
tacaaggtcaatgttttagctcaacaagagctattggggtatgtagctcgcgctccgcgt
tttgctgtagcccataagtttcctgctcaggaaatgaccaccaagctattaagtatcgat
gttcaagtcggtcgtaccggagccattacccccgtcgcacgcttagagcctgtttttgta
ggaggggttacggtaaccaatgctacccttcataacgaagatgagattcgtcgtaaagac
gtgcgcgcaggcgacacggttattgtgcgccgagcaggggatgtgattcccgaggtggtt
gcacccattatcgaactcagacccgaacagacggaactttttgtctttcccaatcaatgt
cctgtctgtggctcagcgatcgagcgccctatggatgaagccattgctcgttgtacaggg
gggttagtctgtgcggcgcaacgcaagcaaagtctcgagcatgccgtcagccgtaaagcg
ttagatgtggatggccttggcaccaaactgatcgaacagctcgtggatgcgaatcgagta
aaaaacttggctgatttatttaccttgactcagctagagctatctacatatccacgcatg
ggcgctaagtcggccggtaatgtggtgcttgccttagagcaagctaaaaacccgcccttg
gctcgttttatttacgccttaggtatacgtcacgtaggcgaggccaccgctaaagcctta
gcggatcattttgtgcacttagcgcgcttggttcaagcaaacgaagaagatctactacaa
attgatgacgtagggccggtagtagcagctgaaattgttaatttttttgccgagccacat
aatcgcgacgtgttaggccaactcgagcaagtcggggtggtgcctattgagccagacgta
caagcaaaccgtgttgccgttacaccgttcagcaataaaactatcgtgttaacaggaacg
ttgcctactttatctcgtaccgaagcccaagccttaattgaacaagggggcggcaaggta
acagggtcagtgtctaaaaaaacagactttgtggtggcaggttcggaggcggggtctaag
ctaaccaaagcgcaaagcttagggattacgattttaaatgaagctcagtttttagagtta
ttacgaagctaa
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