Pseudomonas hormoni: KJF94_06045
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Entry
KJF94_06045 CDS
T09556
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phom
Pseudomonas hormoni
Pathway
phom03030
DNA replication
phom03410
Base excision repair
phom03420
Nucleotide excision repair
phom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KJF94_06045 (ligA)
03410 Base excision repair
KJF94_06045 (ligA)
03420 Nucleotide excision repair
KJF94_06045 (ligA)
03430 Mismatch repair
KJF94_06045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phom03032
]
KJF94_06045 (ligA)
03400 DNA repair and recombination proteins [BR:
phom03400
]
KJF94_06045 (ligA)
Enzymes [BR:
phom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KJF94_06045 (ligA)
DNA replication proteins [BR:
phom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KJF94_06045 (ligA)
DNA repair and recombination proteins [BR:
phom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KJF94_06045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KJF94_06045 (ligA)
MMR (mismatch excision repair)
DNA ligase
KJF94_06045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KJF94_06045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
zf-FPG_IleRS
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QVW25144
UniProt:
A0ABX8F212
LinkDB
All DBs
Position
1309464..1311821
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKTRILELRAELDQHNYRYHVMDEPSIPDAEYDRLFHELKTLEAANPDLITSDSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSA
DIADTHIGNLKQLQAWGMPISRELKLAHGIDECLDYYRDIGERRNGLAYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVMERRPDDARPVQIPQKCPVCGS
HVERTQLVKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFDDIVDLEGFAELSSKKLLSAIEDSKKPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDAHNQQVIADLLKHGL
QIQDQGDLGAEFAASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEGVFGADWLDMRQAL
PEKQANSVREFFAVADNRLIAEAAEKQLRDFGMHWQSEKKVVEGLPLAGQTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGLKVLDEEAFVDFLKK
QGVSI
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaacccgcattctagagctgcgcgctgagctggatcagcacaactat
cgctaccacgtgatggacgagccgagtattccggacgctgaatatgaccggttgttccat
gagctcaagacccttgaagcggccaaccccgacctcatcaccagcgactcgccgacccag
cgcgtcggcagcgcggcgctgtcggcattcactcaggtgcgtcacgaagtgccgatgctc
agcctcggcaacgccttcgaagaaaccgacatgcgcgagttcgatcgccgtgtgacggaa
ggtctggacctgccggccggcgacttgttcggcggcggggcggcggtggaatacagctgc
gaaccgaagctcgatggcctggccgtcagcctgctttatcaggatggtgtgctggtgcgt
ggcgcgactcgcggcgatggcaccactggcgaagacatcagcgtcaacgtgcgcacggtg
cgcaacatcccgctcaaactgcaaggcagcggctggccggcgaccctcgaagtgcgcggc
gaagtgttcatgtccaaagcgggtttcgaacggctcaacgccacgcagctggaagtcggc
ggcaagaccttcgccaacccgcgcaacgcggcggcgggcagtttgcgccagctggattcg
aagatcactgccaaccgcccgctggagttctgctgctacggcatcggccaggtttcggcg
gacattgccgacacgcacatcggcaatctgaagcagcttcaggcgtggggcatgcccatc
agtcgcgagctgaaactggcgcacggtatcgatgagtgcctggattactaccgcgatatc
ggcgagcgccgcaacgggctggcctatgaaatcgacggcgtggtgttcaaggtcaacagc
atcgcctcccagcgtgaactgggtttccgcgctcgcgagccgcgttgggcgattgcccac
aagtttccggccatggaagaactcaccgagttgctcgatgtggaattccaggtcggtcgt
accggtgcggtaacccccgtggcgcgcttgaagccggtcaaggtggcgggcgtcaccgtg
gccaatgcgacgttgcacaacatggacgaagtcgcgcgtctgggcctgatgatcggcgac
actgtgatcatccgccgtgcgggcgatgtgattccgcaagtggtgcaagtggtcatggag
cgccgtccggatgatgcgcgtccggtgcagattccgcagaagtgcccggtttgtggttcc
catgtcgaacgcacgcagctggtcaagcgcagcaaggggcgcgagaccgtcagtgaaggc
gcggtgtatcgctgcgtcgggcgactcgcctgcggtgcgcaactcaagcaggcaatcatt
cactttgtctcgcgtcgcgcgatggacattgaggggctaggcgataaaagcgtcgagcaa
ctggtcgatgaaggcctggtgagttctccggccgatctttatgcgttgaagtttgacgac
attgtcgatctggaggggtttgccgagctgtcgagcaagaagctgctcagcgccatcgaa
gacagtaaaaaaccgagccttgcccggtttatctacgccctgggcattcccgatgtcggt
gaggagacggccaaggtcctggcgcgctctctcggttcgctggagcgggttcagcaagca
ttaccgcaggtgctcacgtacttgccggatgtcggtctggaagtggctcacgagattcac
agcttctttgaagatgcgcataaccaacaggtgatcgcggatctgctcaagcatggtctg
cagattcaggatcagggcgacctgggcgccgagtttgcggcgagcaccacgctgggcggt
ttcctcgacaagttgcacattccttcggtcgggccgggcggggcgcagaaactggcggac
aagttcggttcgctggaaggcgtgttcggcgctgactggctggacatgcgtcaggcgctg
ccggagaaacaggccaattcggtccgcgagttttttgcggttgcggacaatcgcctgatc
gctgaggccgctgaaaagcagctgcgcgatttcggcatgcactggcagagcgagaagaag
gtcgtcgaaggactgccgctggccggacagacctgggtgctgaccggctcgctggaattg
atgagccgcgacgtcgccaaggacaaactcgaaagcctcggcgccaaggtggccggatcg
gtgtcggccaagacccattgcgtagtggccgggccgggtgccggttcgaagttggccaag
gctaatgagctggggttgaaggttctcgatgaagaagcgtttgtcgatttcctgaaaaaa
caaggcgtctcgatctga
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