Pseudomonas hormoni: KJF94_24485
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Entry
KJF94_24485 CDS
T09556
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phom
Pseudomonas hormoni
Pathway
phom03030
DNA replication
phom03410
Base excision repair
phom03420
Nucleotide excision repair
phom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KJF94_24485 (ligB)
03410 Base excision repair
KJF94_24485 (ligB)
03420 Nucleotide excision repair
KJF94_24485 (ligB)
03430 Mismatch repair
KJF94_24485 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phom03032
]
KJF94_24485 (ligB)
03400 DNA repair and recombination proteins [BR:
phom03400
]
KJF94_24485 (ligB)
Enzymes [BR:
phom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KJF94_24485 (ligB)
DNA replication proteins [BR:
phom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KJF94_24485 (ligB)
DNA repair and recombination proteins [BR:
phom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KJF94_24485 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KJF94_24485 (ligB)
MMR (mismatch excision repair)
DNA ligase
KJF94_24485 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KJF94_24485 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
TilS
RNA_ligase
DUF3701
Motif
Other DBs
NCBI-ProteinID:
QVW22972
LinkDB
All DBs
Position
5260642..5262315
Genome browser
AA seq
557 aa
AA seq
DB search
MLLRLFSLFFLTSICSISNAAHCPNWPPARALDEITALQKQIDIWDDSYHRRGHSLVADE
LYDQSRARLTEWCECFDLGMASEPSRATGGKIAHPIAHTGLEKLRDDRAVENWLRDRKDI
WIQPKVDGVAVTLIYRNGMLHQAISRGDGMNGQDWTASAHLIPVIPRQLAQPVDLLVQGE
LYWRLIDHVQAKAGSLNARSTVAGLMARKELAPEQAAGIGLFIWDWPQGPASLPARGAAL
DELGLPSTVPYSQPVQTFADAERWRDHWYRSPLPFASDGVVLRQSQRPSAERWQAKTPHW
VVAWKYPFAQALAQVRKIDFKVGRTGRITPVLDLKPVTLDDRQIKRVSVSSLRRWEELDI
RPGDQVSISLAGLTIPRLDGVILRTAERAELNVPLAADFHPLSCWQPTPGCESQFLARLA
WLSGKQGLALPHVGPGTWEKLLETGQLNGLLDWLTLDAQELANIDGFGERSTTRLLNSFN
SARQRPFARWLKALGLPPTGQAQLADSWQALAQRNTEQWQSEAGIGPGRAAQLSAFFRDP
QVLALSDTLRAAGIDGF
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgcgcctgttttctcttttcttcctgacttcaatctgctcaatatcaaacgct
gcccattgccccaactggccgcccgccagagctctggacgaaatcacagcactgcaaaaa
caaatcgacatttgggacgacagctatcaccgccgtggccactcattagtcgccgacgaa
ctctacgatcaatcccgcgcgcgactgaccgaatggtgtgagtgttttgacctgggcatg
gcgtctgaaccctcgcgcgcaactggcggcaaaattgcccaccccattgcccacacgggc
ctggaaaaactgcgcgatgatcgcgccgtcgagaactggctgcgtgatcgcaaagacatc
tggatacaacccaaggttgacggcgtggccgtgacgttgatctatcgcaacggcatgctg
catcaggcgatcagtcgtggtgacggtatgaacggacaggactggactgcctcggcgcac
ttgattcccgttatcccccgacaactggcgcaacccgtggatttgctcgtgcaaggcgaa
ctctactggcgcctgatcgaccatgtacaagccaaggccggcagcctcaatgcccgttct
acggtagccggcctgatggcccgcaaggaactcgcccctgagcaagccgcaggcatcgga
ctatttatctgggattggccgcaaggcccggccagcctgcccgcccgtggcgcggcgctg
gatgaactggggctgccgagcacggtgccttacagtcagccggtgcagacgtttgccgat
gccgaacgctggcgcgatcactggtaccgctcgcccctgccctttgccagtgacggtgtc
gtcctgcgccagagccaacgcccttcggccgaacgctggcaggcgaaaacaccgcactgg
gtcgtcgcctggaaatacccgtttgcccaggcgttggctcaagtgcgcaaaatcgacttc
aaggtcggtcgcaccggacggatcacccccgtgctggacctgaaaccggtgacgcttgat
gacaggcagatcaagcgcgtcagcgtcagctcccttcgacgctgggaggaactggatatc
cgccccggtgatcaggtgtccatcagcctggcggggctgaccatccccaggctcgacggc
gtcattctgcgcaccgccgaacgcgccgaattaaacgtaccgttggcggcagactttcat
cctttgagttgctggcagccgacgcctggctgcgaaagccaattcctcgcgcgactggcc
tggctcagtggcaagcaagggttggccttgcctcatgtcggtcccggcacctgggagaaa
cttctcgaaacaggccagctgaacggcctgctggattggttgaccctcgatgctcaagag
cttgctaacattgacggtttcggcgagcgcagcacgacgcgtcttttaaacagtttcaac
agcgcccgccaacgcccttttgctcgctggctcaaagccttgggattaccaccgaccggc
caggcgcagctagccgattcatggcaggcactggcacaacgaaacaccgaacaatggcag
tccgaggccggtatcggcccgggacgcgcagcgcaattgagcgcatttttccgcgacccg
caggtcctggccttgagtgacacattacgtgcggcgggaatcgacgggttttag
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integrated database retrieval system
