Phormidium sp. PBR-2020: JWS08_12920
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Entry
JWS08_12920 CDS
T07578
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phor
Phormidium sp. PBR-2020
Pathway
phor03030
DNA replication
phor03410
Base excision repair
phor03420
Nucleotide excision repair
phor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWS08_12920 (ligA)
03410 Base excision repair
JWS08_12920 (ligA)
03420 Nucleotide excision repair
JWS08_12920 (ligA)
03430 Mismatch repair
JWS08_12920 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phor03032
]
JWS08_12920 (ligA)
03400 DNA repair and recombination proteins [BR:
phor03400
]
JWS08_12920 (ligA)
Enzymes [BR:
phor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JWS08_12920 (ligA)
DNA replication proteins [BR:
phor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JWS08_12920 (ligA)
DNA repair and recombination proteins [BR:
phor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JWS08_12920 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWS08_12920 (ligA)
MMR (mismatch excision repair)
DNA ligase
JWS08_12920 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JWS08_12920 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UCJ10734
LinkDB
All DBs
Position
2960068..2962128
Genome browser
AA seq
686 aa
AA seq
DB search
MSQPSPQLQEQTRKLRQQLQEAAHAYYVLDAPIMEDEVYDRLYRELQAIEAEYPQLIAPD
SPTQRVGDKPAAQFTSVRHNIPLYSLDNAFTIDEFAKWQDRWQTRLDSPITPEYICELKI
DGSALALTYEDGVLVRGVTRGDGETGEEITPNVKTIRSIPLRLRGEAIPPRVEVRGEAFL
PLETFERLNQQRQQNQEPPFANPRNAAAGTLRQLDPQIVAQRQLQFFAYTLYCPSDEDPS
DEGDRPFSTHQDALQRLQELGFWVNPHRQLAHGIEDIQAYYEQWGQERRDLPYLTDGVVV
KLNDIALQRRLGFTQKAPRWAIALKYPAEEVPTTVQSVDFQVGRTGAVTPVANLNPVQLA
GTTVSRASLHNGDRLRELDLHYGDTVVVRKAGEIIPEVVRVLPKLRPDGAEAVKMPNHCP
ECQQPLVKPQEEAVTRCVNRSCPAILRGALNHWGSRGALDIDGLGEKLIAQLCDRRFLNS
LADLYRLRPEDLSHLERMGHKSATKLVESIQHSKQQPWSRVLYGLGIRHVGAVNAQTLAQ
AFPTVEALAQASQDEIAEIQGIGPEIAGAIADWFQLRANRDLIEQLQEVGVSLGSPPEAE
TAPDSPQPLAGQTFVLTGTLPNLSRKEAKTLIEGAGGKVTSSVSSKTNYVVVGENPGSKQ
VKAQGLGIPQLSEAQLRELVGLSPQA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgagccaacctagcccccaactccaggaacaaactcggaaactccgccaacagttgcaa
gaggcggcccatgcctactacgttctcgatgctcccattatggaagatgaggtgtacgat
cgcctctatcgagaactgcaagccatcgaagccgagtatccgcaactgatcgcgcctgat
agtcccacccagcgcgttggcgataaaccagcggctcaatttacctctgttcgccataat
atccccctctatagcctggataacgccttcaccatcgacgagtttgccaaatggcaagat
cgctggcaaactcgtctcgattcccccatcacccctgagtacatctgtgaactgaaaatc
gacggttcggctctggccctaacctatgaggatggggttttggtgcggggggttacccga
ggcgacggggaaaccggggaagagattaccccaaatgtaaaaaccattcgttctatcccc
ctgagacttcggggtgaggcgattccccctcgggtggaagtgcgtggcgaagccttcctc
cccctggagacctttgaacgcctgaatcagcaacgtcagcagaaccaggaaccgcccttc
gctaaccctcggaacgcagcggcgggaaccctgcgacaactcgatccgcaaattgtcgct
cagcgtcagcttcagtttttcgcctataccctgtattgtcccagtgatgaggaccccagt
gatgagggcgatcgccccttcagcacccaccaagacgctctccaacggctgcaagagttg
ggcttttgggtgaatcctcaccgccaactggctcacggtattgaggatatccaggcctat
tatgagcaatggggacaggagcgacgggatctcccctatctcaccgatggggtggtggtg
aaactcaatgacatcgccctgcaacgtcgcctcggatttacccaaaaagctcctcgctgg
gcgatcgcccttaaatatcccgccgaggaagtccccaccactgtccaatctgtggacttc
caagtggggcgtacgggggctgtgactccggtggctaacctcaaccccgttcaactggcc
ggaaccaccgtgtctcgggccagtctccacaatggcgatcgcctgcgggaattggactta
cattatggggataccgtcgtggtgcgcaaagccggggaaatcattccggaagtggtgcgc
gtcctgccgaaattgcgtccggatggggcagaggcggtgaaaatgccaaatcactgcccc
gagtgccaacaacccctcgtgaagccgcaagaggaggcggtaacgcgctgtgtgaaccgc
tcctgtccggccattttgcgcggggccttgaaccattggggcagtcggggggccttggat
attgatggcttaggggagaagttaatcgcccaactgtgcgatcgccgcttcctcaactcc
ctagctgacctctatcgcctacggccagaggacttaagccatttagagcgcatgggccat
aaatccgccacaaagctcgtcgagtcgattcagcactctaaacaacaaccctggtcccga
gttctttatggcttagggattcgtcatgtgggggcggtgaatgctcaaaccttggctcaa
gccttccccacagtagaggcgttagcccaagccagtcaggatgagattgccgaaattcag
gggattggccccgaaattgccggggcgatcgccgactggttccaactcagggccaatcgg
gacttaattgagcaactgcaagaggtgggggtctccctagggagtcctcccgaggcagaa
accgcccccgattcgccccaacccctcgccggccaaaccttcgtcctcaccggaacccta
cccaacctcagccgtaaggaggcgaaaactctcattgaaggagctggaggaaaggtgacc
agttccgtcagttccaaaaccaattatgtcgtcgttggggagaaccctggttccaaacag
gtcaaagcccaaggcttgggaatcccgcaactctcagaagcccaattgcgggagttagtg
gggttatccccccaagcctga
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integrated database retrieval system
