Phosphitispora sp. TUW77: ABFY19_02660
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Entry
ABFY19_02660 CDS
T10992
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phos Phosphitispora sp. TUW77
Pathway
phos03030
DNA replication
phos03410
Base excision repair
phos03420
Nucleotide excision repair
phos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABFY19_02660 (ligA)
03410 Base excision repair
ABFY19_02660 (ligA)
03420 Nucleotide excision repair
ABFY19_02660 (ligA)
03430 Mismatch repair
ABFY19_02660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phos03032
]
ABFY19_02660 (ligA)
03400 DNA repair and recombination proteins [BR:
phos03400
]
ABFY19_02660 (ligA)
Enzymes [BR:
phos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABFY19_02660 (ligA)
DNA replication proteins [BR:
phos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABFY19_02660 (ligA)
DNA repair and recombination proteins [BR:
phos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABFY19_02660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABFY19_02660 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABFY19_02660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABFY19_02660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Nlig-Ia
HHH_3
APG6
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
XPO22413
LinkDB
All DBs
Position
557980..559974
Genome browser
AA seq
664 aa
AA seq
DB search
MNRDTAARRITELTELLNEHNYNYYVLDNPKISDTEYDGLMQELIKIEEVYPDLVLPDSP
SSRVGGAPAAGFETVSHLVPMLSLSNAFGEQDLRDFDRRVRGGLAGGTVEYVVELKIDGL
AVSLLYENGFLVRGATRGDGETGEDISRNLKTINSIPLRLRRPLELLEVRGEAYLPKKEF
ARINREREEAGLPTFANPRNAAAGSLRQLDPRVAASRALDAFLYGIGSVSGINVTGHRQS
LEELQELGFKINPNVRAFNDIEQVIDYCREWAEKRHDLPYEIDGMVVKVNDLSLQTELGA
TSKSPRWAVAYKFPAEEVETVVKNIFVRVGRTGVLTPTALLEPVRVAGSTVSSATLHNID
IVREKDIRIGDHVVIHKAGDVIPEVVRVVRDKRTGKETEFHMPGECPVCRTGVQRVEGEV
AVRCPNETCPGREREGLIHFVSRDAMDIEGLGPAVIDQLLSAGLIRDAADLYYLKAEDLL
ELERMGRKSVENLLNAIEKSKQKDLSQLIFALGIRHIGARTGKILAAQFGSMARLQAAGL
DELTAVPEIGPKMAESIVAYFREPVNLKLLDRLKAAGVKLTQETQQTGERPFDGKTFVLT
GTMEKYTRKEAETIIESLGGKVSSSVSKKTDFVVAGKEAGSKLDKALALGVTVISETDFE
EMSG
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
ttgaatagggatacagcggctcggagaattacagaactgaccgaactgcttaatgaacat
aactataattactatgttttggataatccgaaaatttctgatactgaatatgatggcttg
atgcaggagcttattaagattgaagaagtttatcctgacttggtgctgccggattcacct
agcagccgggtagggggcgctcctgcagcagggttcgaaacagtcagccacctggttccg
atgctgagtctaagcaatgcttttggtgagcaggacttaagggattttgaccgcagggtc
aggggcggtttggcaggcggcacggttgagtatgttgttgaactgaaaatagatgggctt
gcagtttctcttctttatgaaaacgggtttcttgtccggggggctactaggggggacggg
gaaacgggagaagatatatctcgaaatttgaagactatcaacagcatccccctgaggctg
aggcgtcccctggagctgctggaagtcaggggagaggcatatttgcccaaaaaggagttt
gcccgtatcaacagggagcgggaagaggcggggctgcccacttttgccaatccacgcaat
gccgcagccgggtcactgcggcagcttgacccacgggttgccgcatcccgggcgctggat
gccttcctttatggtattggcagtgtttcagggataaatgtaacaggtcaccgtcagagt
cttgaggagctgcaggagctgggcttcaagataaacccaaatgtgcgagcttttaatgat
attgaacaagttattgattactgcagggaatgggctgaaaaaaggcatgacctcccatat
gaaattgatggcatggttgttaaggtaaacgacttgtcactgcagactgaactgggggct
accagcaagagccccaggtgggcagttgcatacaagtttcctgcagaggaagtggaaacc
gttgttaaaaatatctttgtcagagtaggcaggacgggagtgcttactccaacggcatta
ctggaacctgtgcgggttgccgggtccactgtaagcagtgccaccctgcacaatattgac
attgtccgtgaaaaagatatcaggataggtgaccatgtggtcatccacaaggctggggac
gttatccctgaagtggtgagggtagttagggacaaaaggacgggtaaggaaacggagttt
catatgcctggggaatgccctgtatgcaggaccggtgttcagcgggtagagggtgaggtt
gctgttcgctgccctaatgaaacttgtccgggcagggagcgggaaggcctgattcatttt
gtatccagggatgccatggatattgaaggactgggcccggcagttattgaccaactgctg
agcgcaggacttatcagggatgctgcggacctgtattacctgaaagcagaggacctgctt
gaattggagcgtatgggcagaaaatctgtggaaaacctcctcaatgccattgaaaaaagt
aagcaaaaggatttgtctcaattaatttttgccttagggatacgacatatcggggcaaga
acgggaaagatactggctgcacaatttggttccatggcccggcttcaggctgccggattg
gatgagctgactgcagttcccgaaatcgggcctaagatggctgagagtattgtggcatat
ttccgggaaccggtcaatctcaagctgcttgatagattaaaagcagccggtgttaagctt
actcaggaaacccagcagaccggggagcggccctttgacgggaagacgtttgtactgacc
ggtaccatggaaaaatacacccgcaaggaggctgagactataattgaatcacttggcggg
aaggtaagttccagtgtcagtaaaaaaactgattttgtagtggcaggaaaagaagcaggc
tctaaactggataaagcactggcccttggggtaacagtgatttcagaaactgatttcgaa
gaaatgagtggttaa
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