Paenarthrobacter sp. R1: QN084_18455
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Entry
QN084_18455 CDS
T10646
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phrz Paenarthrobacter sp. R1
Pathway
phrz03030
DNA replication
phrz03410
Base excision repair
phrz03420
Nucleotide excision repair
phrz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QN084_18455 (ligA)
03410 Base excision repair
QN084_18455 (ligA)
03420 Nucleotide excision repair
QN084_18455 (ligA)
03430 Mismatch repair
QN084_18455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phrz03032
]
QN084_18455 (ligA)
03400 DNA repair and recombination proteins [BR:
phrz03400
]
QN084_18455 (ligA)
Enzymes [BR:
phrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QN084_18455 (ligA)
DNA replication proteins [BR:
phrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QN084_18455 (ligA)
DNA repair and recombination proteins [BR:
phrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QN084_18455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QN084_18455 (ligA)
MMR (mismatch excision repair)
DNA ligase
QN084_18455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QN084_18455 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WIV30278
LinkDB
All DBs
Position
3868690..3870993
Genome browser
AA seq
767 aa
AA seq
DB search
MSTPENPDRVSTTSMATAAVAVEEGAPPSENLREEYQELVDLVRKYRYAYYQEDAPTVSD
AEYDLLYRRLEELEALHPELVANDSPTQEVGGEVSAAFAAVEHLQRMYSLDDVFSLDELE
AWVRKVEASVAKLGDRVPPISWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHN
VLTIKEIPRQLSGSGYPSEVEIRGEVFIPSKAFAEFNDSLVAAGKAPLANPRNAAAGSLR
QKDPAETAKRPLSMFVHGIGAREGLDAASQSETYKLLGEWGLPVSPYSKVLDSYDGVLEF
IAHYGEHRHGLLHEIDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIMV
NVGRTGRVTPFGLMEPVKVSGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIVG
PVLALRDKQDPPVREFVMPTECPSCGTPLAPSKEGDVDIRCPNGKSCPSQLRERVFHVAS
RGAFDIEALGWEAAIALTQPAEPEIPPLTSEAALFDLTREDLANVMIRREKKSKGVGTGQ
YELVPYFYTKATAKTPSKPTATTEKLFTELEKAKKQPLWRVLVALSIRHVGPTASRALAT
NFGSMDAIRNATEEQLAHVDGVGPTIAAALKEWFAVDWHNEIVDRWAAAGVRMEDDRDTA
TPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKAAGSVSKNTSYLVAGESAGTKLDKAE
QLGIPVLDEDGFRELLANGPAAPEGQPATSEGQENVDEAAAREGESE
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaccagagaatccagatcgggtcagcaccacatccatggccacagccgccgtc
gccgtagaggagggtgcgccgccgtcggaaaacctccgggaagagtaccaggaactggtt
gacctggtccggaagtaccggtacgcgtattaccaagaagacgctcccactgtttccgac
gctgaatatgacctcctgtaccggcgcctggaggaattggaagccctccatccggagctc
gtcgcgaatgattcacccacccaggaagtgggcggtgaggtctccgcggcttttgccgcc
gtcgagcacctccaacggatgtacagcctcgatgacgtgttctcgctcgacgagctggag
gcctgggtgcggaaggtcgaggcgtcggtggccaagctcggggacagggtcccgccgatc
tcgtggttgaccgagttgaagatcgatggcctggccgtgaacctgctgtaccgggacggc
aagctggtgcgcgctgctacccgcggcgatggcaccacgggtgaggacatcacccataac
gtcctgaccatcaaggagatcccgcggcagctcagcggctcgggctatccgtccgaagtt
gagatccgcggcgaggtcttcattccgtccaaggctttcgcggaattcaacgactcgttg
gtggcagcgggcaaggcgccgctggccaacccccgcaacgccgccgcgggttcgctccgg
caaaaagatccggcggagaccgccaagcgtcccctcagcatgttcgtccacggcatcggg
gcgcgtgaagggctggatgcggccagccagtcggagacctacaagctcctgggcgaatgg
ggactcccggtcagtccctactcgaaggtcctggactcttacgacggcgtcctggaattc
attgcccactacggcgaacaccgccacggcctcctgcacgagatcgacggcatcgtggtg
aagatcgatgacttcgccacccaacgcgcactcggctacacctcccgcgtgccgaggtgg
gccgccgcgtacaagtacccgccggaagaggtccacaccaaactgctggacatcatggtc
aacgtcggccggaccggacgtgtcactccgttcgggttgatggagcccgtcaaggtgtcc
ggctccaccgtgggcatggctacgctgcacaaccaggacgtcgtcaaagccaaaggcgtg
atgatcggcgacatcgtgattcttcgcaaagccggtgacgtcatccccgaaattgtcggt
ccggtactggcgctccgcgataagcaggatccgcccgtccgcgaattcgtcatgcccacc
gaatgcccttcctgcggcactccgctcgcgccttccaaggagggcgacgtggacatccgc
tgccccaatggaaagtcctgcccttcccagttgcgtgagcgggtcttccacgtggccagc
cgtggcgccttcgatatcgaggccctcggctgggaagcggctatcgctttgacccagccc
gcagaaccggagattcccccgctgaccagcgaggccgcgctgtttgacttgacgcgcgaa
gatctggcaaacgtgatgatccgccgcgagaagaaatccaagggcgtcggcacaggccag
tacgaactcgttccctacttctatacgaaagccacggccaagacgccgtcaaagcccact
gccaccacggagaagcttttcacggagctggagaaagccaagaagcagcccctgtggcgg
gtgcttgtagcgttgtccatccgccacgtcggtcccaccgcctcgcgggcactggcaacc
aacttcggaagcatggatgccattcggaatgcgaccgaggaacaactggcccatgtggac
ggcgtcggaccgaccattgcggctgcccttaaggaatggttcgcggttgactggcacaac
gagatcgtggacaggtgggctgccgccggcgttcggatggaggatgaccgggatacggct
actccgcgcacgcttgaaggactgaccgtggtggtcacgggaaccctgccgaacttcagc
cgggatgaggccaaggaagccatcatcatccgtggtggcaaggcggcaggctcggtatcg
aagaacaccagctatctggtggccggggaaagcgctggtaccaagctggacaaagcggaa
cagctcgggatcccggtgttggatgaggacggattccgtgagctcctggccaatgggcca
gctgcgccggaaggtcagcccgccacgtctgaaggccaggagaacgtcgatgaagctgcc
gcgcgggaaggggaatccgaatga
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