Primulina huaijiensis: 140971515
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Entry
140971515 CDS
T11038
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
phua Primulina huaijiensis
Pathway
phua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
140971515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phua03400
]
140971515
Enzymes [BR:
phua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
140971515
DNA repair and recombination proteins [BR:
phua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
140971515
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
DNA_ligase_IV
RNA_ligase
TPGS1_C
Motif
Other DBs
NCBI-GeneID:
140971515
NCBI-ProteinID:
XP_073289913
LinkDB
All DBs
Position
2:30138416..30150910
Genome browser
AA seq
1207 aa
AA seq
DB search
MAETKFSVMVSLFNWIQKSKSSSVKRSKFRKFLDTFCRPSNGDDYFSAIRLILPSLDRER
GSYGLREHVLATSLIDALGMSREASDSQRLLNWRKGGPKSGAFAGNFSLVAAEVLQRRQG
MASGGLTIKELNELLDRLASSENRTEKTSVLSELIRKTNAQEMKWIIMIILKDLKLGISE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSLRHKRQDIEVGKPVRPQLAMRVSNSAVA
WKKLHGKEVVVECKFDGDRIQIHKNGAVINFFSRNFLDHPEYIHGMSDIINENILVDRCI
LDGEMLVWDKSANRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYVGDTSVIHQSLKE
RHQNLKKIVKPIAGRLEILVPNGGLNTHCPAGEPCWSRIVHNVDDVERFFKETIENRDEG
IVLKDLGSKWEPSDRSGKWLKLKPDYIHAGSDLDVLIIGGYYGSGRRGGDIAQFLVGLAE
RPAPNTYPRRFVSFCRVGTGLSDEELDAVVTKLKPYFRKYESSKMAPPSFYQVTNNSKER
PDVWVESPEKSIVLSITSDIRTIRSEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFVEL
VHSSNGTTQKWTDYAVEDNKPKRAKLSRGAKKNVSAVPSHFIKTDVSQVKGETSIFSNMV
FYFVSVPSSHSLDSLHKMVVENGGTFSMNLNSSVTHCIASESKGIKFQAAKHQGDVIHCS
WFIDCCSKKMLLPLLSKYYLFLSDITKKRLQEEIDEFFDSYYLDINTADLKQILKDIGKI
EYPNSIEYYKKKLCPKEEWTRFHGCCIHFHLPNQLLKNMNWKTPLELAMRRMKVEVSMGG
GTVTETLHHATHLVVVSYPQLDVDFDTLLSSFMEAERALLRSKNLQIVKSEWLENCFEKR
QKLPEESYSLKPLGFGQSLSELDDQHNVGREDYSSYFNMGNRDASPSSDKREKWSKTYAT
ADKPRLVNLPTRSIKRKRGSSSGNNTGKEKPIVNQPRRTRARIGNKPAKISENESDEVAS
LDEKNTSENSDMNCGIPETVKDKGKSGCSRPRRTTRARIRNKPAKIGENAFDLDGSSDRQ
TIRKNFEVSEAKLVPDIQMEATVEESEAPERGQPVEPAVAECSGSRTQCNNQVANTLDPV
QAMLLNMLPILSTQKTDTPTAIVEEVKFRDTDQTQDEEKLPSNVDTKPATKRKVSYKDVA
NQLLKDW
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaacgaagtttagtgtgatggtcagcctgttcaattggattcagaagagcaaa
tcctcgtcggttaaacgctccaaattccgcaagtttcttgacacattctgccgccccagc
aacggcgacgattacttctccgccattcggttgatactcccaagcctcgaccgagagcgc
ggatcctacggcctccgcgagcacgtcctcgccacaagcctcatcgatgcccttggaatg
tcccgtgaagcttctgactcccaacgtctcctcaactggaggaagggaggcccaaaatct
ggcgcctttgcaggaaacttctctcttgtcgcagctgaggtgctacaaaggaggcagggc
atggcgtcaggaggacttacaattaaggaattgaatgagttacttgatcggttggcttca
agcgaaaataggacagagaagacatcggttctttctgaattgattaggaaaacaaatgct
caggaaatgaagtggataattatgataattcttaaagatctcaagttgggaattagtgag
aagagcatctttcatgaatttcaccctgatgctgaggacctgtttaatgtcacctgtgac
ctaaaactggtttgtgaaaagttgcgagatcgaagtctgagacataaacgacaggacatt
gaagttggcaaacctgttcgccctcaactagctatgagagtcagcaattccgctgttgca
tggaaaaagcttcatggcaaggaagttgttgttgagtgcaaatttgatggtgatcgcatc
caaatccataaaaatggagcagtgataaatttcttctcgaggaactttcttgatcacccg
gaatacatacatggcatgtcagatattataaatgagaatatccttgttgacaggtgtatt
cttgatggtgaaatgttggtttgggacaaatcagcgaatcgatttgcagagtttggttct
aatcaggaaatagccaaggctgcaaaggaggggcttgatagtgatcggcagttgtgttat
gttgcatttgacattctttacgttggagataccagtgttatccaccaaagcttgaaggag
agacaccagaatcttaagaaaattgtcaaacctatagcaggtcggttggagattttggtt
cctaatggcggactcaatactcattgccctgctggggaaccttgttggtcacgaattgtt
cataatgttgatgatgttgagagatttttcaaagaaaccattgagaacagagacgaagga
attgttctgaaagatcttggctccaaatgggaacctagtgatcgaagtgggaagtggctg
aagttgaagcctgattatattcacgctggctcggatttagatgttcttatcataggggga
tactatggatctgggcgtcgtggaggagatattgctcaattccttgttggtctggcagag
cgtcctgccccaaacacgtatcctagacgatttgtctccttctgcagagtgggtacaggg
ctctctgacgaggagcttgacgctgttgtgactaaattgaagccatatttcaggaaatat
gaaagttcaaaaatggcaccaccaagcttttaccaagttacgaataactcaaaggagaga
ccagatgtttgggttgaaagcccggaaaaatcgattgtcctttccatcactagtgacatt
cgaacaatcagatccgaggtttttgctgctccgtatagcttgagatttccacgaattgat
cgagtgagatatgacaaggcttggcacgaatgccttgatgtgcaatcttttgttgaatta
gtacattcaagcaatggtaccacccaaaagtggacagattatgcagttgaggataacaag
ccaaaacgtgcaaagttgtctagaggagcgaaaaagaatgtttctgccgttccttcccat
tttataaagacagatgtttcgcaagttaagggagagacttcaatattttcaaacatggtg
ttctactttgtaagtgtaccttcgtcccattcgcttgattctctgcacaaaatggtggtt
gaaaatggcggtactttctccatgaatctgaacagttcggttactcactgtattgcttct
gagagtaaaggaatcaagtttcaggctgcaaagcaccagggagatgttattcattgctct
tggttcattgattgttgctcaaagaagatgcttctacctttactgtcaaaatactatctt
ttcctctccgacattacgaagaaaaggttgcaagaagaaatcgatgaattctttgactct
tactatttggatattaatactgcagatctcaaacagatcctaaaagacataggtaagatc
gaatatcccaactcaattgagtattacaagaaaaagctatgtccgaaggaagaatggact
cgctttcatggttgctgcattcactttcatctcccaaaccaattattaaaaaatatgaac
tggaaaactccattggagcttgcaatgagaaggatgaaagttgaggtttccatgggtggt
ggaactgttactgagactcttcaccatgctactcatttagtagttgtgtcttatccacag
cttgatgtggactttgatacgttattgagtagtttcatggaggcagagagggctctcttg
cgcagtaaaaatttgcaaattgtcaagtcagagtggttggagaactgcttcgagaagcgc
cagaagttgccagaggagagttacagtttgaaacccttgggctttggccagtctttatca
gagttagacgatcaacacaacgttggtagagaagattacagtagctattttaatatggga
aatagggatgcatctccttcttctgacaaacgtgagaaatggagcaaaacctatgctacc
gcagataagccaagattagtcaacttgcctaccagaagtataaaaaggaaacggggaagt
tcaagtggaaataatacgggaaaggaaaaaccaattgttaatcagcctcgaagaacaaga
gcacggattggaaacaagcctgctaagatatctgaaaatgaatcagatgaagttgcttct
ttagatgagaaaaacacatccgaaaacagtgacatgaattgtgggatccctgagacggtt
aaagataaaggaaaatcgggttgcagtcgtcctcgaagaacaacaagggctcggattagg
aacaagcctgcaaagattggcgagaatgcgtttgatctagatggttcatcagatcggcaa
actatcagaaaaaactttgaagtcagtgaagcaaagctcgttcctgatattcaaatggaa
gcaacagtggaagagtctgaagcaccagaaagaggccaacctgttgaaccagccgttgct
gaatgtagtgggagcagaacacagtgcaacaatcaagttgcgaacacactcgatccggtt
caagccatgctgctaaatatgttaccaattctttcaacccagaaaaccgatactcctact
gccattgttgaagaggttaaatttcgagatactgatcaaactcaagatgaagaaaaattg
ccttcaaatgttgatacaaaaccggctacgaaaaggaaagtcagctacaaggatgtcgct
aaccaactgcttaaagattggtaa
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