Pseudomonas hamedanensis: HU739_008570
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Entry
HU739_008570 CDS
T07661
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phv
Pseudomonas hamedanensis
Pathway
phv03030
DNA replication
phv03410
Base excision repair
phv03420
Nucleotide excision repair
phv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU739_008570 (ligA)
03410 Base excision repair
HU739_008570 (ligA)
03420 Nucleotide excision repair
HU739_008570 (ligA)
03430 Mismatch repair
HU739_008570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phv03032
]
HU739_008570 (ligA)
03400 DNA repair and recombination proteins [BR:
phv03400
]
HU739_008570 (ligA)
Enzymes [BR:
phv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU739_008570 (ligA)
DNA replication proteins [BR:
phv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU739_008570 (ligA)
DNA repair and recombination proteins [BR:
phv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU739_008570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU739_008570 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU739_008570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU739_008570 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
AphA_like
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QXI19028
UniProt:
A0A9E6TIU3
LinkDB
All DBs
Position
complement(2013856..2016213)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQ
RVGSMALTAFTQVRHEIPMLSLGNAFEESDMREFDRRVTEGLDIPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGEGWPATLEVRG
EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSH
DISDTHIGNLKQLQKWGMPISHELKLAKGIDECLEYYRDIGARRNALAYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPDDARPVAIPESCPVCGS
HVERTQLIKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVNSPADLYALKFDDIVDLEGFAEVSSNKLLKAIEDSKQPGLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPHVLTYLPDVGLEVAHEIHSFFEDAHNQQVITQLLGHGL
QIQDQGELGAEFAASTTLGGLLDKLHIPFVGPGGAQKLADKFGSLEAVMNADWLDMRQAL
PEKQANSVRDFFAVPEHRQLAEQAEQQLRDFGMHWQSEKKVVEGLPLAGETWVLTGKVEL
MSRDVAKDHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKVMDEEAFIAFLKT
HGIAV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaacccgcattctagagctgcgcgctgagctggatcagcacaactac
cgttaccacgtcctcgatgagccgagcattccggatgccgagtacgaccggttgtttcac
gagcttaaggcactggaagcggccaacccggaactgatcaccagcgactcgccgacccag
cgtgtcggcagcatggcgctgaccgcgttcactcaggtgcgtcacgaaatcccgatgctc
agcctcggcaacgccttcgaagaatccgacatgcgcgagtttgatcgccgcgtgaccgaa
ggtctggatatccccgctggcgatctcttcggtggcggcgcggcggtggagtacagctgc
gagccgaagctcgatggcctggcggtcagcctgctgtatcaggatggtctgctggtgcgc
ggcgctacgcgtggcgatggcaccaccggcgaggacatcagcgtcaacgtgcgcaccgtg
cgcaacattcctctgaagctgcacggcgagggctggccggcgaccctggaagtgcgcggt
gaagtgttcatgtccaaggcaggtttcgaacgcctcaacgcttcgcaattggagattggc
ggcaagaccttcgccaacccacgcaacgcggcggcgggcagcctgcgtcagctggattcg
aagatcaccgccaaccggccgctggaattttgctgctatggcatcggccaggtctcccac
gatatttccgacacccacattggcaatctcaagcaattgcagaagtggggcatgccgatc
agtcacgagctgaaactggccaaaggcatcgacgaatgcctcgagtactaccgcgacatc
ggtgcccggcgcaatgcgctggcctatgaaatcgatggcgtggtgttcaaggtcaacagc
attgccgaccagcgtgagctgggctttcgcgcccgcgaaccgcgctgggcgatcgctcac
aaattcccggcaatggaagaactcaccgaactgctcgatgtggaattccaggtcggtcgc
accggcgccgtgaccccggtagcacgtctgaaaccggtgaaagtcgccggcgtcactgtg
gccaacgccacgctgcacaacatggacgaagtggcgcgtctgggcctgatgattggcgat
acggtgattatccgccgcgccggtgatgtgattccgcaagtggtgcaggtagtcaccgag
cgtcgccccgatgacgcgcgcccggtcgccattcctgaaagctgcccggtgtgcggctcc
catgtcgagcgcacgcaactgatcaaacgcagcaagggcaaggaaaccgtcagcgagggc
gcggtatatcgctgcgttgggcggctggcctgtggcgcgcaactgaagcaggcgatcatt
cacttcgtctcgcgccgggcgatggacatcgaagggctgggcgacaagagcgtcgagcaa
ctggtcgatgaaggtctggtcaactcgccggccgatctgtatgcgctgaaattcgatgac
atcgtcgatctggaaggcttcgccgaggtctccagcaacaagcttttgaaggccattgaa
gacagcaagcaaccggggctggcacgcttcatctacgccctcgggattcccgatgtcggc
gaagaaacggccaaggtgctagcgcgctcgctgggttcgctggaacgcgtgcaacaggcc
ttgccgcacgtgctgacctacctgccggacgtcggcctggaagtggcgcatgagattcac
agcttcttcgaagacgcgcacaaccagcaggtgattacgcaattgctgggccacggcctg
cagattcaggatcagggcgaactgggcgccgagtttgccgccagcaccacgctgggcggc
ttgctcgacaagctgcatattcctttcgtcggccccggtggtgcgcaaaaactggcagac
aagttcggttcgctcgaagcggtgatgaacgctgactggctggacatgcgtcaggcgctg
ccggagaaacaggccaactcggtgcgcgacttttttgccgtgcccgagcatcgccaactg
gccgagcaagccgagcaacagctgcgcgattttggcatgcactggcagagcgagaagaag
gtcgtcgaaggcctgccgttagccggggaaacctgggtgctgaccggcaaggtcgagttg
atgagccgggatgtggctaaagatcacctcgaaagccttggcgccaaggtcgccggttca
gtctcggcgaaaacccattgtgtggtcgccggtccaggtgccgggtcgaaattgaccaag
gccaacgaactgggcgtgaaggtcatggatgaagaggcgtttatcgctttccttaaaacc
catggcatcgctgtctga
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