Phycicoccus sp. HDW14: G7075_03015
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Entry
G7075_03015 CDS
T06484
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phw
Phycicoccus sp. HDW14
Pathway
phw03030
DNA replication
phw03410
Base excision repair
phw03420
Nucleotide excision repair
phw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G7075_03015 (ligA)
03410 Base excision repair
G7075_03015 (ligA)
03420 Nucleotide excision repair
G7075_03015 (ligA)
03430 Mismatch repair
G7075_03015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phw03032
]
G7075_03015 (ligA)
03400 DNA repair and recombination proteins [BR:
phw03400
]
G7075_03015 (ligA)
Enzymes [BR:
phw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G7075_03015 (ligA)
DNA replication proteins [BR:
phw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G7075_03015 (ligA)
DNA repair and recombination proteins [BR:
phw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G7075_03015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G7075_03015 (ligA)
MMR (mismatch excision repair)
DNA ligase
G7075_03015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G7075_03015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH
HHH_5
PTCB-BRCT
RNA_lig_T4_1
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QIM20352
LinkDB
All DBs
Position
601965..604145
Genome browser
AA seq
726 aa
AA seq
DB search
MRQDWRVSETPTDPAAQEPADAVPDDVRHEWETLAEEARGHQFAYHVKDAPTISDGEYDV
LMRRLNAIEDEHPSLRTPDSPTQQVGGAVFSTEFQAVDHLERMLSLDNAFSTDEMLEWNA
RVTRDAGGAELHYLCELKIDGLAVNLLYEKGRLTRALTRGDGRTGEDVTLNVRTVRGIPT
ELAGTTAHPVPDLVEVRGEVYFPIEAFGELNAQLVEAGKPPYANPRNTAAGSLRQKDPRV
TASRELRMLVHGLGKREGFDLTRQSEAYAALGAWGLPVSTHFRVVDTIEEVTAFIAHTGE
HRHDVEHEIDGVVVKIDEISVQRRLGSTSRAPRWAIAFKYPPEEVNTTLLDIQVNVGRTG
RVTPFGVMAPVVVAGSTVERATLHNATEVQRKGVLIGDTVVLRKAGDVIPEILGPVVDLR
DGTEREFVMPTHCPACGTALAPEKEGDKDIRCPNSRSCPAQLRERLSSLAGRGAFDIEAL
GWEGSVALLDSGVLDDPELGGPSEAMLFSLTAADVAKVPLYTRAAKKTDPEGAVVDGRVL
SANGQRLVDNLAVAREQPLWRVLVALSIRHVGPTAARALAQHLGSMQRIREASLEELAGV
EGVGPVIAEAVRDWFDREGNDWHVRIVERWAEDGVRMEDERDESVEQTLAGLTVVVTGSL
EGYSRDEAKEAVLARGGKASGSVSKKTDYVVVGANAGSKEDKARELGLTILDEAGFTRLL
ETGSAD
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgcggcaggattggcgcgtgagcgagacgccgaccgaccccgcagcgcaggagcccgcc
gacgccgtgcccgacgacgtgcggcacgagtgggagaccctcgccgaggaggcgcgcggg
caccagttcgcctaccacgtcaaggacgcaccgaccatcagcgacggcgagtacgacgtg
ctcatgcggcggctcaacgccatcgaggacgagcacccctcgctgcgcaccccggacagc
ccgacccagcaggtcggtggggcggtcttctccaccgagttccaggccgtcgaccacctc
gagcggatgctcagcctcgacaacgccttctccaccgacgagatgctcgagtggaacgcg
cgggtcacccgcgacgcgggcggtgccgagctgcactacctctgcgagctgaagatcgac
gggctggccgtcaacctgctctacgagaagggacgcctgacccgggccctgacccgcggc
gacggacgcaccggcgaggacgtcaccctcaacgtgcgcacggtgcggggcatccccacc
gagctcgcgggcacgacggcccaccccgtacccgacctcgtcgaggtgcgcggcgaggtc
tacttcccgatcgaggcgttcggcgagctcaacgcccagctcgtcgaggccggcaagccg
ccctacgccaacccgcgcaacaccgcggcagggtcgttgcggcagaaggaccctcgcgtc
acggccagtcgcgagctccggatgctcgtccacggcctcggcaagcgcgagggcttcgac
ctcacccgccagagcgaggcctacgccgccctcggggcgtgggggctgccggtctccacg
cacttccgggtcgtcgacacgatcgaggaggtcaccgcgttcatcgcccacacgggggag
caccgccacgacgtcgagcacgagatcgacggcgtcgtcgtcaagatcgacgagatctcg
gtgcagcgccggctcggctccacgtcgcgcgcgccgcgctgggccatcgccttcaagtac
ccgcccgaggaggtcaacacgaccctcctcgacatccaggtcaacgtcgggcgcaccggc
cgggtcacgccgttcggggtcatggcccccgtcgtcgtcgccgggtccaccgtcgagcgg
gcgacgctccacaacgccaccgaggtgcagcgcaagggggtcctcatcggcgacaccgtc
gtcctgcgcaaggccggcgacgtcatccccgagatcctcggcccggtcgtcgacctgcgc
gacggcaccgagcgcgagttcgtcatgccgacgcactgccccgcgtgcggcaccgcgctg
gcccccgagaaggagggcgacaaggacatccggtgccccaacagccgctcctgcccggcc
cagctgcgcgagcggctctcgagcctcgccggccggggcgcgttcgacatcgaggccctc
gggtgggagggctcggtggccctgctcgactcgggtgtcctcgacgaccccgagctgggc
ggcccgagcgaggcgatgttgttctcgctcaccgcggccgacgtcgcgaaggtcccgctc
tacacgcgcgcggcgaagaagaccgaccccgagggcgccgtcgtcgacggccgcgtcctg
tcggccaacggccaacggctcgtcgacaacctcgccgtggcgcgcgagcagccgctctgg
cgggtcctcgtcgccctctccatccggcacgtcgggcccaccgcggcccgcgcgctggcc
cagcacctcggctcgatgcagcgcatccgcgaggcgagcctcgaggagctggccggggtc
gagggggtcggcccggtcatcgccgaggcggtccgcgactggttcgaccgcgagggcaac
gactggcacgtgcgcatcgtcgagcgctgggccgaggacggcgtgcggatggaggacgag
cgcgacgagtcggtcgagcagacgctcgccgggctcaccgtggtcgtcaccgggtcgctc
gagggctactcccgcgacgaggcgaaggaggccgtcctggcccgcggcggcaaggcctcg
ggctcggtgtcgaagaagaccgactacgtcgtcgtcggcgccaacgcggggtccaaggag
gacaaggcccgcgagctggggctgaccatcctcgacgaggccggcttcacccgcctcctc
gagaccggcagcgccgactga
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