Peptacetobacter hiranonis: KGNDJEFE_00531
Help
Entry
KGNDJEFE_00531 CDS
T06633
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phx
Peptacetobacter hiranonis
Pathway
phx03030
DNA replication
phx03410
Base excision repair
phx03420
Nucleotide excision repair
phx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KGNDJEFE_00531 (ligA)
03410 Base excision repair
KGNDJEFE_00531 (ligA)
03420 Nucleotide excision repair
KGNDJEFE_00531 (ligA)
03430 Mismatch repair
KGNDJEFE_00531 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phx03032
]
KGNDJEFE_00531 (ligA)
03400 DNA repair and recombination proteins [BR:
phx03400
]
KGNDJEFE_00531 (ligA)
Enzymes [BR:
phx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KGNDJEFE_00531 (ligA)
DNA replication proteins [BR:
phx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KGNDJEFE_00531 (ligA)
DNA repair and recombination proteins [BR:
phx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KGNDJEFE_00531 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KGNDJEFE_00531 (ligA)
MMR (mismatch excision repair)
DNA ligase
KGNDJEFE_00531 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KGNDJEFE_00531 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
RNA_ligase
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QEK20050
LinkDB
All DBs
Position
509105..511141
Genome browser
AA seq
678 aa
AA seq
DB search
MGKEDIKLQIDNLIDKINYHSDKYYNQDTPEISDFEYDMLMKELIKLEAENPEFKRVDSP
SNRVGGMALDKFDQVTHKNPMLSLSNAYSAEDLRDFDRRVREMTDGDVEYVVEFKIDGLS
VGITYENGEFKSAATRGNGIIGEDISKNVMTIKSIPLKIDDKREIIVRGEVYISKENFEK
VNEYQEEHDLQIFANPRNLAAGSLRQLDSKLTAKRPLDIFVFNLENINELDGIDTHSDSL
EYLKKLGFSVSENYKICKSIDEVIEFIEYWTENRGSLKFDIDGMVVKVNNIEQRNEMGFT
AKSPRWAIAYKFPAERKKSKILDIEVEVGRTGTITPTAILEPVRLAGTSVSRATLHNEDF
IREKDIKLFDHVIVQKAGDIIPQIVEVVKEDRTGDEKDFVMPSVCPECGEPTVRLEGEAA
VKCINISCPAQIRRGMIHFVSREAMDIDGMGESIITLFLKEGLIKDVSDIYYLKKEQIVP
LERMGEKSADNLIKAIEKSKSNDLWRLINGLGIRFVGVKGAKILASNFSSLDEIINADVE
RLQQLEEFGSIMSESVVKFFREEQNLAVIQKLKDAGVNTEAGEDKSEGIPQLFEGMKIVL
TGTLPTLKRNQAKEIIELRGGKATSSVSKSTTFVLAGEEAGSKLTKANDLGIKVIDEDMF
LKLSEMGSKEDVLSELGM
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagaagatataaaactacaaatagataatctaatagacaaaataaactaccac
agtgacaaatactacaaccaagatactccagaaatctcagatttcgagtatgatatgctt
atgaaagaactaatcaagctcgaagcagaaaacccagagttcaagagagtggactctcct
tctaatagagttggggggatggcacttgacaagtttgaccaggttacgcacaaaaatccg
atgcttagtctatcaaacgcatactctgctgaagatttaagagattttgacagaagagtg
agagagatgactgacggggatgtagagtatgttgttgagtttaagatagatggactttct
gtagggataacttacgaaaatggagagtttaaaagtgctgcaactagaggaaatgggata
attggagaggatatttctaaaaatgtcatgacgataaagagcattcctttaaagattgac
gataagagagagataatcgtcagaggagaggtttacatatctaaagaaaattttgaaaag
gtcaatgaatatcaggaagagcacgacctacagatatttgccaatccgagaaatttagca
gcaggatcactaagacagttagactcaaagctaactgcaaagagacctttagacatattt
gtatttaacctagaaaatatcaacgaattagatggaatagatacacactctgattcatta
gaataccttaaaaaactaggcttctcagttagtgaaaactacaaaatctgtaaatcaata
gatgaggttatagagtttatagagtattggacagaaaacagaggaagtttaaaattcgat
atagatggtatggttgttaaggtaaacaacattgagcagagaaatgagatgggatttaca
gctaagagtccaagatgggctattgcgtacaagttcccagctgagagaaagaagagcaag
attttagatattgaggtagaggttggtagaacaggtacaatcactccaacagctattctt
gagcctgttagactagcaggtacttctgttagtagggcgactcttcacaacgaggacttt
atcagagaaaaggatataaaattatttgaccatgttatagttcagaaggctggggatatt
attccgcagatagttgaggttgtgaaagaggatagaacaggggatgagaaagattttgtc
atgcctagtgtctgccctgagtgtggtgagccgacagttagacttgaaggtgaagctgca
gttaagtgtataaatatctcttgtccagctcagattagaaggggaatgatccactttgtt
tcgagagaggctatggatatagatggtatgggtgagtcaataatcacattattcctaaaa
gaaggtctaataaaagacgtttctgatatatattatctaaaaaaagagcagattgtgcca
cttgaaagaatgggagaaaaatctgctgataatttaattaaagcaatcgaaaaatcaaaa
tcaaacgacctatggagattgataaatgggttaggaattagatttgtaggcgtgaaagga
gctaagatactagcttcaaacttcagcagtttagacgaaattataaacgccgatgttgag
agattacagcagcttgaagagtttggaagtattatgtctgagagtgttgtaaaattcttt
agagaagaacagaatttagcagttattcagaagttaaaagatgctggggtaaatactgaa
gcaggtgaggacaaatctgaaggtataccacagttatttgaagggatgaagatagttctt
actggtacacttcctacattaaagagaaatcaggctaaggagattatagagcttagaggt
ggaaaggctacttcaagtgttagcaagtctactacatttgtgcttgctggagaggaagct
ggctcaaaattaactaaggccaatgatttaggaataaaggtaatcgacgaggatatgttc
ttaaaattatctgaaatgggaagcaaggaagatgtattatcagaacttggaatgtaa
DBGET
integrated database retrieval system
