Pseudomonas hygromyciniae: JTY93_18380
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Entry
JTY93_18380 CDS
T09404
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phyg
Pseudomonas hygromyciniae
Pathway
phyg03030
DNA replication
phyg03410
Base excision repair
phyg03420
Nucleotide excision repair
phyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JTY93_18380 (ligA)
03410 Base excision repair
JTY93_18380 (ligA)
03420 Nucleotide excision repair
JTY93_18380 (ligA)
03430 Mismatch repair
JTY93_18380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyg03032
]
JTY93_18380 (ligA)
03400 DNA repair and recombination proteins [BR:
phyg03400
]
JTY93_18380 (ligA)
Enzymes [BR:
phyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JTY93_18380 (ligA)
DNA replication proteins [BR:
phyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JTY93_18380 (ligA)
DNA repair and recombination proteins [BR:
phyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JTY93_18380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JTY93_18380 (ligA)
MMR (mismatch excision repair)
DNA ligase
JTY93_18380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JTY93_18380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
QSB38229
LinkDB
All DBs
Position
complement(4137233..4139590)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLQKWGMPISHELKLAKGIEDCLAYYRDIGERRNSLPYEIDGVVFKVNSIAY
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVAERRPENARAVQIPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADVSSKKLIAAIENSKAPTLARFIYALGIPDVGEET
AKVLARSLASLERVQQALPEVLTYLPDVGLEVAHEIHSFFEDSHNQQVIGALLSPDECAL
VLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGSLEGVIQADWLDMRQAL
PEKQAKAVREFFDNPENARRALAIEQQLKDFGMHWQSEKKVIEGLPEAGHTWVLTGSLEL
MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAK
HHITV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgttaccacgtcctcgatgaaccgagcatcccggacgccgagtacgaccggttgttccac
gaactcaaggcgctggaagccgagcatccggatctggtgacccgcgattcgccgacgcag
cgggtgggcagcgcggcgttgtctgcgtttacccaggtgcgccacgagatcccgatgctc
agcctgggcaacgccttcgatgaaaccaccatgctggagtttgatcgccgggtcaccgag
ggcctcgacctgccggtgggcgatctgtttggcggcggcgcggcggtggaatacagctgt
gagcccaagcttgatggcctggcggtcagcttgctgtatcaggacggtgagctggtgcgc
ggcgcgacccgtggcgacggcacaaccggcgaagacatcagcgtgaatgtgcgcaccgtg
cgcaatatcccgttgaaactacacggcacaggttggccggcgaccctggaagtgcgcggc
gaagtattcatgtccaaggccggtttcgagcgcttgaatgccacgcaactggaagtcggc
ggcaagaccttcgccaacccgcgtaacgcggctgcgggcagcctgcgccaactcgactcg
aagattaccgccagccgtcccttggagttctgctgctatggcgtgaccacggatatcagc
gacacccatatcggcaacctgcagcagttgcagaagtggggcatgcctatcagtcacgag
ctgaagctggccaagggcatcgaggattgcctggcgtactaccgcgatatcggtgagcgg
cgtaacagcctgccctatgaaatcgacggggtggtgttcaaggtcaacagcattgcctac
cagcgtgaactgggctttcgcgcccgcgagccgcgctgggccatcgcccataagtttccg
gcgatggaagaactgaccgagttgctggacgttgaattccaggtcggccgcaccggcgcc
gtgacgccggtggcgcgcttgaagccggtcaaggtggctggcgtcaccgtgtccaatgcg
acgttgcacaacatggacgaagtggcgcgcctgggcctgatgatcggtgacaccgtgatc
atccgccgtgcgggggatgtgatcccacaggtcgtgtcggtggttgccgaacgtcgcccg
gaaaatgcccgcgcggtacagattcctgagagctgtccggtgtgtgggtcccatgtggag
cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtat
cgctgtgtcgggcgcctggcctgtggtgcgcagctcaagcaggcgatcattcatttcgtc
tcgcgacgggcgatggatatcgatggcttgggcgacaagaccatcgagcagttggtcgat
gaaaagcttatcggctcgccggctgacctgtacaagctcaagtacgagcagatcatcgat
ctggaaggcttcgccgatgtttccagcaagaaactgatcgccgctatcgaaaacagtaag
gccccgactctggcacggtttatctacgccctgggtattcccgatgtgggcgaggaaacc
gccaaggtgctggcgcgctccctggcgtcccttgagcgcgtgcagcaagccttgccggaa
gtgctgacgtacttgccggatgttggcctggaggtggctcacgagatccacagtttcttt
gaggacagtcacaaccagcaggtgatcggcgcgctgctgtcgccggacgaatgcgcgctg
gtcttgcaggatcagggcgagctcagcgctgagttcgccgccagcaccaccttgggcggc
cttctcgacaagttgcacgtgccttccgtggggccgggtgctgcgcagaagttggcggac
aagttcggctccctggagggtgttatccaggccgactggctggacatgcgtcaggcgcta
ccggagaagcaggccaaggcggtgcgggagttcttcgataatccggagaatgctcgtcgt
gcgctggccatcgagcagcagctcaaggacttcggtatgcactggcagagcgagaagaag
gtgatcgagggcttgcctgaagcgggtcacacctgggtactgaccggctcgctggagttg
atgagccgcgacgtggccaaggaaaagctcgaaagcctgggcgccaaagtggcaggctcg
gtatcggcgaaaacccattgcgtggtcgcagggccgggcgccgggtcgaaattggccaag
gccagcgagctggggttgaaggtcttggatgaggaggctttcgtcgccttcctggccaag
caccacatcactgtctga
DBGET
integrated database retrieval system
