Phyllobacterium sp. 628: HB779_18385
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Entry
HB779_18385 CDS
T08362
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
phyl
Phyllobacterium sp. 628
Pathway
phyl03030
DNA replication
phyl03410
Base excision repair
phyl03420
Nucleotide excision repair
phyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HB779_18385 (ligA)
03410 Base excision repair
HB779_18385 (ligA)
03420 Nucleotide excision repair
HB779_18385 (ligA)
03430 Mismatch repair
HB779_18385 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyl03032
]
HB779_18385 (ligA)
03400 DNA repair and recombination proteins [BR:
phyl03400
]
HB779_18385 (ligA)
Enzymes [BR:
phyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HB779_18385 (ligA)
DNA replication proteins [BR:
phyl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HB779_18385 (ligA)
DNA repair and recombination proteins [BR:
phyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HB779_18385 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HB779_18385 (ligA)
MMR (mismatch excision repair)
DNA ligase
HB779_18385 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HB779_18385 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
DZR_2
LcrG
Motif
Other DBs
NCBI-ProteinID:
QND53636
UniProt:
A0A7G6SGK4
LinkDB
All DBs
Position
complement(3398052..3400196)
Genome browser
AA seq
714 aa
AA seq
DB search
MADISVEQLSEAEAVEELGRLAAEIAQHDYRYNTEDAPTISDGEYDALRRRNLAIEQRFP
HLKRDDSPSNKVGATVSEKFGKVAHAIPMLSLDNAFSDQDVQDFVDRIRRFLKLGASAPV
AITAEPKIDGLSLSLRYELGRLVTAATRGDGATGENVTLNARTVASIPNVLSGNPPEVLE
VRGEVYMSHADFAAMNERQVQDGKPVFANPRNAAAGSLRQLDATITASRPLQFFAYAWGE
VSDMPATTQMGMVEAFKSYGFRVNPLMQKFDTVEGLVKHYHQIEEQRATLGYDIDGVVYK
VDDLALQQRLGFVSRSPRWAIAHKFPAERAITILRGIDIQVGRTGALTPVARLEPVTVGG
VVVTNVTLHNEDYIKGIGQNGQPVREGRDLRVGDTVVVQRAGDVIPQIVDIVEDKPRGAS
PYVFPDTCPACGSHAVREEGEVVRRCTGGLICPAQAVERIRHFVSRNAFDIEGLGEKQVE
FFFKSDDPALHIGTPADIFTLKKRQAASLAKLENIDGFGAVSVKKLYDAIDDRREVTLSR
FIYGLGIRHVGEVNAKRLAKAYRSYDALAAVAEAAALPVDKSDKGNDAWRELNDVEGIGS
IVAEALVDFYAEEHNRQALAALLAEVTPLDEEVRAVSNSPVAGKTIVFTGSLERMSRDEA
KAMAERYGAKTAGSVSKKTDLVVAGPGAGSKLTQAQTLGIEVIDEDSWFTLVGA
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatttccgtagaacaattgagcgaagcagaagcggtagaggaactcggacgt
ctggccgcagaaattgcccagcacgattaccgctacaacacagaagatgcccccaccatt
tcggatggcgaatacgatgccttgaggcgcaggaaccttgccattgagcagcgctttccg
cacctgaagcgtgatgattcaccctccaacaaggtgggcgcaacagtttcggaaaaattt
ggcaaggtcgcgcatgccataccgatgctgtcgctcgataatgcgttctccgatcaggat
gtgcaggattttgttgatcggatccggcgctttctcaagctgggtgccagcgcgcccgtt
gccatcacggcagaacccaagatcgacgggttgtcgctatccctgcgttatgaattgggg
cggctggtcacagcggcgacgcgaggggacggtgccactggtgaaaacgtcacgctcaat
gcgcgcactgtggccagcatcccgaacgttctgagcggcaatccgccggaagtgcttgag
gtgcgcggtgaagtctatatgagccatgcggattttgccgccatgaacgagcggcaggta
caggatggcaagccggttttcgccaatccgcgcaatgcggctgcgggttcgctgcgccag
ctcgatgcaacgattaccgcatcgcggcctctgcagttttttgcctatgcctggggtgag
gtgagtgacatgcccgcgacaacccagatgggcatggtggaagcattcaaatcctacggt
ttccgggtcaatccgttaatgcagaagtttgacactgtcgaaggtcttgtcaaacattac
caccagatcgaagagcagcgggcgacgcttggctatgacatcgatggtgtcgtctacaaa
gttgatgatctggctttgcagcagaggctgggttttgtgtcccgcagtccgcgctgggcc
attgcccacaagttcccggcagaacgcgcaataacaatcctgaggggcattgatattcag
gttggccgtaccggtgctctgacgccggtggcgcggcttgagccagtcacggtcggcggt
gtggttgtgaccaacgtaacgctgcataatgaggattatatcaagggtatcggccagaat
ggacagccggtccgcgaaggacgcgatcttcgcgttggtgatacggtggtcgtgcagcgg
gcaggcgatgtcattccgcagatcgtcgatattgttgaagacaagccgcgcggtgcctcg
ccctatgttttcccggatacatgtccggcttgcggctcgcatgcggtgcgcgaggagggt
gaggttgttcggcgctgcacaggtggactgatctgcccggcgcaggcagtcgagcgtatc
cgccacttcgtatcgcgaaatgcctttgacatcgaaggccttggcgaaaagcaggttgag
ttcttcttcaaatcggatgatccagccctgcatatcggtacgccggcggatattttcacc
ctgaagaaacggcaggcggcatcactcgccaaacttgagaatattgacgggtttggtgca
gtctcggtcaagaagctttatgatgcgattgatgaccggcgcgaggtcacactcagccgt
ttcatttatgggttgggcatccgccacgtcggcgaggtcaacgccaagcgtctggctaaa
gcctatcggtcatacgatgctcttgcagccgtggccgaagctgcagccttgccggtggac
aaatcggacaagggtaatgatgcatggcgtgaactcaacgatgttgaaggcattggcagt
atcgtcgctgaagcgctggtggatttttatgccgaagagcacaaccggcaagctttggcc
gccttgcttgcagaagtgacgccgctcgatgaagaggtgcgggccgtcagcaattcgccg
gttgcgggtaagacgattgtcttcaccggttcgctggaacgtatgtcacgggatgaagcc
aaagccatggccgaacggtatggcgccaagaccgctgggtcggtttccaagaaaaccgat
cttgtcgtcgccggacccggcgctggttccaaactgacacaagcgcaaacattgggcatt
gaagtcattgacgaggattcctggttcacattggtgggtgcatga
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