Pangasianodon hypophthalmus (striped catfish): 113528415
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Entry
113528415 CDS
T05759
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113528415 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113528415 (eftud2)
Spliceosome [BR:
phyp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113528415 (eftud2)
Complex C
U5 SnRNP specific factors
113528415 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
113528415
NCBI-ProteinID:
XP_026772751
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDEDVEAEDRDAVEADEDEEDEDQVDGDEDGGGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKQFTLTEQELPATVYDMEFLAD
LMDSSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTER
LIKHAVQERLAITICINKIDRLILELKLPPTDAYYKLRHIVDEVNGMLSTYTTDESLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
NSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVQHIPSPQGGARAKIEHSYTGGLDSDLGEAMTECDPDGPLMCHTTKM
YSTDDGVQFHAFGRVLSGTLQAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASIIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMVKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggagacagatctgtacgacgaattcggtaactacatcgggcccgaactggactctgat
gaggatgaagacgtagaggcggaggacagagatgcggttgaggcggatgaggatgaggag
gatgaagaccaggttgatggtgatgaggatggtggcggcatggaggtcgttctgcatgag
gataagaagtattatccgactgcagaggaagtctatgggcccgaagtggagaccatcgtc
caagaagaggacacacaaccacttactgagcctattataaagcctgtgaagacgaagcag
ttcactcttacagagcaagagcttccagctacagtttatgacatggaatttctcgcggat
ttaatggacagctccgaactgattagaaacgtcactctgtgcggtcatttacaccacggc
aagacatgctttgtggactgcctgattgaacagactcatccggaaatccgtaagagagat
gatgcagatctgcgctatacagatattcttttcaccgaacaagagagaggagttggtatt
aagagcacacctgtgacaatggtacttcctgactcaagagggaaatcctacctgttcaat
attatggacactccaggtcatgtgaacttctctgatgaggttacagcaggaatcaggctt
tcagatgggattgtgctgttcatcgatgctgccgagggggtgatgctgaacacggagcgt
ctgataaaacatgccgtacaggagcggctggccataaccatctgcatcaacaaaatagac
cggctgatcttggagctcaaacttcctcccactgacgcctactacaaactgcgccatatc
gtcgacgaggtcaatggcatgctcagcacatatacaactgatgagtctctagtggtgtct
cctctgctgggcaacgtgtgtttcgcttcctcacagtacagcatctgctttacactcggg
tctttcgccaagatctactcagatacctatggtgacataaactacaacgagtttgcaaag
agactctggggagacatctacttcaaccccaagacgaggaagttcactaaaaaagccccc
aacagtaactcacagcgcagctttgtcgagttcgtcctggagccgctctacaagatcctc
tcacaggtggtcggggatgtggacacgtcactgccacgtgtcctggatgaattagggatc
cacctgaccaaagaggagctcaaactcaacatccggcctctgctgcgactcgtctgcaac
cgcttctttggggagttcacaggttttgtggacatgtgcgtgcagcacatcccgtctcct
caagggggcgccagagccaagatcgagcacagctacaccggaggactggactcagacctc
ggggaggccatgactgagtgtgaccctgatggtccgttaatgtgtcacaccactaagatg
tacagtacagatgacggagtgcagttccacgcctttggcagggttctgagcggaacgctg
caggcagggcagccggtgaaagtactaggagagaattacacactggaggacgaagaggac
tcgcagatctgcactgtcggacgcctctggatctctgtagcaaggtatcagattgaggtg
aatcgggtccccgctggcaattgggtgctaattgaaggctgtgaccaacccatcgtgaaa
acagccaccatcacagagcctcggggcaatgaagaggctcagatcttcaggcctctgaaa
ttcaacactgcttccatcatcaaaattgcagtggagcctgtgaatccttctgagctgccc
aagatgttggatggactgagaaaagttaacaagagctacccatcccttacaacaaaggtg
gaggagtctggagagcacgttatcctgggtacaggtgagctctacctggactgcgtcatg
cacgacctgagaaagatgtactcagagatcgacatcaaggtagctgaccctgtagtgacg
ttttgcgagacagtggtggaaacatcctctctcaagtgctttgctgaaacacccaataaa
aagaacaagatcacgatgattgctgagcctctggagaaaggccttgctgaagacattgag
aacgaggtggtgcagattacatggaacagaaagaagttgggagagttcttccagaccaag
tatgactgggatttgctggcagctcgatctatctgggcttttggacccgacaccactgga
cccaacatcttagtagacgacacactgccctctgaggtggacaaagctctccttggctca
gtgaaggacagcatcgttcagggcttccagtggggaactagagaaggtcctctgtgtgat
gaacccattcgtaatgtgaagtttaagattctggatgcagtcatagctcaggagccgtta
cacagaggaggcgggcaggtcattcctaccgcaagaagagtcgtgtattccgccttcctc
atggctacacccaggctgatggagccctattactttgtggaggttcaagctcctgctgat
tgtgtatctgctgtttacactgtactggcacgcaggagaggtcatgtgacacaggatgca
ccaatccccgggtcgcctctatacaccattaaggctttcattcctgcaatcgactcattt
gggtttgagactgatctgcgtacacacacacagggacaggccttcgcactcagtgtgttc
caccactggcagattgttcctggtgatcctctggacaagagcatcgtgattcggccgtta
gagcctcaacccgcccctcatctagccagagagttcatggtcaagactcgtagacgcaag
ggtttgagcgaggacgtcagtatcagcaagttcttcgacgatcctatgttgttggagctg
gccaagcaggatgtggtgttgaactaccccatgtga
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integrated database retrieval system
