Pangasianodon hypophthalmus (striped catfish): 113529545
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Entry
113529545 CDS
T05759
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3
KO
K03174
TNF receptor-associated factor 3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04620
Toll-like receptor signaling pathway
phyp04621
NOD-like receptor signaling pathway
phyp04622
RIG-I-like receptor signaling pathway
phyp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
113529545 (traf3)
04621 NOD-like receptor signaling pathway
113529545 (traf3)
04622 RIG-I-like receptor signaling pathway
113529545 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
113529545 (traf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
Crescentin
zf-C3HC4
zf-C3HC4_2
ATG16
RING_XB3-XBAT31
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_4
Laminin_II
Cluap1
EzrA
COG3_N
DUF1664
AAA_13
Fzo_mitofusin
IFT57
Phage_TAC_8
Exonuc_VII_L
zf-Di19
MPS2
Filo_VP35
FapA
Motif
Other DBs
NCBI-GeneID:
113529545
NCBI-ProteinID:
XP_026774597
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MSLSRRVDGREQQIALQQQQSLLPQRGGFQDHFVMPPEPKYCCEYCRMVLCNPRQTECGH
RFCESCINQLLSKPNPVCPADMEPLSQDKIFRDVCCHREIMTLKVYCRSAKNGCKEQMSL
QQVTDHLNMCEYFEVPCPLCKEKIMRKDMPEHLNRKCKYREATCEFCKHKMALTELQKHK
ETICPAFPVACPNHCSFSSIVRSELSIHQQDCPKAQVTCSFFRFGCTYKGLNQEMREHES
SFASEHLRLMVARSNTLEAKVEDVKNELMERYKVLPSLSSRLTEVEEQCKDMREKYRQVE
QKLSSVQKLMSAHTEKLLEVEMELRELRPLRAMREEVEALRGAVESMRSVVASLDSVRTG
PGTHTLTSLETQLSRHDEMLSVHDIRLADMDLKLQVLETASFNGTLIWKIRDYKRRKQEA
VASKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFRQ
KVTLMLMDQGPARKHLGDAFKPDPNSSSFRRPTGEMNIASGCPLFVAQTVLENGTYIKDD
TIFIKVTVDTSDLPDP
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtccttgtcgcgccgtgtggacgggcgggagcagcagattgctctgcagcagcagcag
tccttactcccgcagcgtggtggttttcaggaccacttcgtcatgcctcccgagcccaag
tactgctgcgagtactgtcgcatggtgctatgtaatcctcggcagactgagtgtggacac
cgcttctgcgagagctgcattaaccagctgcttagtaaaccgaatccggtgtgcccagct
gatatggagccattatctcaagataaaatatttcgtgatgtttgctgccatagagagatt
atgacactgaaagtctactgccgcagtgcgaaaaacggatgtaaagaacaaatgagttta
cagcaggttacggaccatttgaatatgtgtgagtactttgaggtgccctgtccgttgtgt
aaagagaagataatgaggaaggacatgcctgaacacttgaaccgcaaatgcaaataccgt
gaggccacctgtgaattctgcaaacacaaaatggccttaacggagctacagaaacacaaa
gaaaccatttgtcctgcatttccagtagcatgccctaatcattgttcattttcatccatt
gtaagaagcgagctgtccattcaccagcaagactgtccaaaggctcaagtcacgtgctcc
ttctttcgttttggctgcacctacaagggtctgaaccaggaaatgagggagcacgagtca
agctttgcctcagagcacttgcgactgatggtggccagaagcaacacgctagaggccaaa
gtggaggatgtcaagaatgagctgatggaacgctacaaggttctcccaagtctgagcagt
cgtcttacagaagtggaggaacagtgtaaggatatgagggagaaataccgacaggtggag
cagaaactatctagcgtacagaagctaatgagcgcgcacacggagaagctgctggaggtg
gagatggagctgagggagctgcggcctttgagggccatgcgtgaggaagtggaagctctg
aggggcgccgtggagagtatgcgctctgtggtagcatcactcgactctgtccgcactggt
cctggtacccacacgctgacctcattagagacacagctgtcacggcatgatgagatgctc
agtgtgcatgacattcgtttggccgacatggaccttaagctgcaggtgctggagacggcc
agctttaatggaactcttatttggaagattcgtgactacaaacggcgcaagcaagaggca
gtggcttctaaaacgttgtcgctttatagccagcctttctacacaggctattttggctac
aagatgtgtgcgcgtgtttacctgaatggtgatggcatgggaaagggtacacacctgtca
ctcttcttcgtggtgatgcgtggtgagtatgatgcactgctgccatggcctttccgccaa
aaagtgacactcatgctgatggaccagggtcctgcacgcaagcacctgggtgatgccttc
aagcctgacccaaacagcagcagcttccggcggcccacaggggagatgaacattgcctcg
ggctgtccactctttgttgctcagactgtgctggagaacgggacctacatcaaagatgac
accatcttcatcaaggtcacagtggacacctcagacctgcctgacccatga
DBGET
integrated database retrieval system
