KEGG   Pangasianodon hypophthalmus (striped catfish): 113529620
Entry
113529620         CDS       T05759                                 
Symbol
pdgfrb
Name
(RefSeq) platelet-derived growth factor receptor beta isoform X1
  KO
K05089  platelet-derived growth factor receptor beta [EC:2.7.10.1]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04010  MAPK signaling pathway
phyp04020  Calcium signaling pathway
phyp04510  Focal adhesion
phyp04540  Gap junction
phyp04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    113529620 (pdgfrb)
   04020 Calcium signaling pathway
    113529620 (pdgfrb)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    113529620 (pdgfrb)
   04540 Gap junction
    113529620 (pdgfrb)
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    113529620 (pdgfrb)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01001 Protein kinases [BR:phyp01001]
    113529620 (pdgfrb)
  09183 Protein families: signaling and cellular processes
   04090 CD molecules [BR:phyp04090]
    113529620 (pdgfrb)
Enzymes [BR:phyp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.10  Protein-tyrosine kinases
    2.7.10.1  receptor protein-tyrosine kinase
     113529620 (pdgfrb)
Protein kinases [BR:phyp01001]
 Receptor tyrosine kinases (RTK)
  PDGFR family [OT]
   113529620 (pdgfrb)
CD molecules [BR:phyp04090]
 Proteins
  113529620 (pdgfrb)
SSDB
Motif
Pfam: PK_Tyr_Ser-Thr Pkinase Ig_3 I-set Ig_2 ig V-set Ig_VEGFR-1-like_5th C2-set_2 Ig_6 VEGFR-1-like_Ig-like RIFIN EcsB VEGFR1-3_N_Ig-like
Other DBs
NCBI-GeneID: 113529620
NCBI-ProteinID: XP_026774719
LinkDB
Position
Unknown
AA seq 1082 aa
MQGVRVSLFPLTPLITALLILLLCSAGSGLELSPSTKEIILTTNASISIICSGWAPVSWR
YKRDEKQPVFRTENRSLTSSVLHLENVTWRHTGVYVCTEDGSEESREVAIYVPDPEEWFL
ENDYLAITKTSDEGTVPCLVTDPKINVTLHEKDTESLVTGKYIPTRGFTGILEDKIYKCR
GEYNGEEKWSHLFYVFSILVPEALDAHINASKTVLKQGEPLSVNCTAHGVELVFFSWELP
NKDVGDVEVLTDIIPATMSMRSFLNISQTTLEHSGQYVCHAQESVGNQRTSLSINITVLE
RGFVELSSFLNPNVSALLHENVELRVEVEAYPKPHIRWSKDGAMINGDNVINTRQEQETR
YVSTLTLVRIRLEQKGYYTVHVANEDDSKEMTFDLVVKVPPQITELSDHHLPEKKHAVTC
VAEGVPSPNIQWFSCDSIHKCGNKSTVWSPLVADTESINIVNNNTYNESRKIHQVYSQVT
FLRPQQITVRCQARNERGARARDIRLVTSTLFSQVAVLAAVLALVVIAIIFIIILIAVWR
KKPRYEIRWKVIESVSQDGHEYIYVDPVHLPYDLAWEMPRDSLVLGRVLGSGAFGRVVEA
TAYGLTNSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPL
YLVTEFCRYGDLVDYLHRNKQSFLQNYANKIHLANGSDSHICIDSVVPSGKGYVSFGSES
DGGYMDMRKEDMTEYVAMQELTDTIKYADIQPSPYESPYQQDIYQEQGHRVDLSLVISDS
PILSYSDLVGFSFQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDN
NYISKGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYN
ALKRGYRMAKPMHASEEIYEVMRKCWEEKFEKRPEFSYLVQEMGNMLTEGYKKRYSQVSE
SFQKSDHPAVVRSKPRVPSPFPCTLPPSSPSTIFPPSSTPNHCLEADQEMAPAPYNGYII
PIPDPKPEEECQEVSMPTESPSSSSVGSEAETASLEAPSAEQECNDQLKEHSNTPDAEES
FL
NT seq 3249 nt   +upstreamnt  +downstreamnt
atgcagggagtccgtgtcagccttttcccactgacacccttaataacagccctcctgatc
ctcctgctgtgttcagctggttctggtctggagctcagccccagcacgaaagagatcatc
ctgaccactaatgcctcaatctccatcatctgttccggctgggcgcctgtctcctggcgc
tacaaaagagatgagaaacaacctgtgttcagaacagagaaccgatccctcacctctagc
gttctccaccttgagaatgtgacatggagacacacaggagtgtacgtgtgcactgaggat
ggttctgaggagagcagggaggtggctatctatgtgccagacccggaggagtggtttttg
gagaatgactatcttgcaatcactaagacaagcgatgaagggacagtcccttgtctggtg
acagacccaaaaataaacgttacgctccatgaaaaagacactgaaagcctagtgaccggc
aagtacatacccaccagaggctttacaggaatactggaagacaagatttacaaatgcaga
ggagaatacaacggagaggaaaagtggtcccatttattctacgtcttcagcatcttagtt
cctgaggcgctggacgcccacatcaatgcctcgaagacggtgctgaaacaaggcgagccg
ctcagcgtcaactgcacggcccacggagttgagcttgtcttcttctcctgggagttaccg
aacaaagacgttggagatgtggaagtcttgacagatataatcccagcgaccatgagcatg
cgctccttcctgaacatatcccaaaccactctggaacactctggacagtacgtctgccac
gcacaagagagcgtgggcaatcaacgtacttctcttagtatcaacatcactgtgctggag
agaggttttgtcgagctgagctcatttctaaaccctaatgtctcagcattgctgcatgag
aacgtggagctgagggtggaggtggaggcataccccaagcctcacatccgctggagcaaa
gatggagccatgatcaatggagacaacgtcatcaacacgagacaggaacaagagaccagg
tacgtcagcacattaactctagtgagaatccgcctagagcagaaaggctattacactgtt
catgtcgccaatgaggatgattccaaagagatgacctttgacctagtggttaaagttccc
cctcagataaccgaactttcagatcatcacctgccggagaagaagcacgccgtcacctgt
gtggcagagggagtcccatcccccaatatccagtggttcagctgtgacagcattcacaaa
tgcggcaacaaaagcactgtgtggagccccctagtggcagatacagagagcatcaacatt
gtaaacaacaacacctataacgagagccgcaagatccaccaggtgtacagccaggtgaca
tttctccgtcctcagcagatcactgtccgctgccaggccaggaacgagagaggagctcgg
gcacgggacatcagacttgtcactagcactctgttctcacaggtggctgttctggctgcg
gttcttgcactagttgtcatagccatcatttttatcatcatcctaatcgcagtgtggagg
aagaagccgcgttatgagatcagatggaaggtgattgagtctgtgagtcaggatggacat
gagtacatctacgtggaccctgttcacctcccctatgacctggcctgggagatgcctcga
gacagccttgtcctcggtcgcgttctgggatcaggggcgtttggcagagtggtagaggca
actgcatatggactcaccaattcccagtcttctactaaagtggctgtgaaaatgctcaaa
tcaacggcgcgtaggagcgagactcaggctctgatgtccgagctgaagatcatgagtcac
ctgggtccacaccttaacatcgtcaacctgctgggagcctgcaccaaacaaggtcctctg
tacctggtgacggagttctgtcgatacggagacctggtggactaccttcacaggaacaag
cagagcttcctgcagaactacgctaacaagatccacctggctaacggcagcgacagccac
atctgcatcgactcagttgtgccttctgggaaaggctacgtgtcatttggctctgagagt
gacggtggttatatggacatgaggaaagaggatatgactgaatatgtggccatgcaagag
ctgacagacaccatcaaatatgctgatatccagccatctccatatgagtcaccatatcag
caggacatctaccaggaacaaggtcacagagtggacctctcactggtcatcagtgattct
cccattctgagctactctgatctggtgggcttcagcttccaggtggccaaaggcatggag
tttctggcctccaaaaattgtgttcaccgggacctggcggctaggaatgtcttaatatgt
gagggaaaactggtgaaaatctgtgactttgggctggccagagacatcatgcatgacaac
aattacatctccaaaggcagcacgttcctgccgctgaagtggatggccccagagagcatc
ttccataacctctacaccacactcagtgatgtctggtcttatggtattttgctgtgggag
atattcactctgggaggaaccccatacccagatctccctatgaatgagctcttctataac
gctcttaagagaggctatcggatggctaaacccatgcacgcttcagaggaaatttatgag
gtgatgaggaagtgctgggaagagaagtttgagaagaggccggagttctcctatctggtg
caggagatggggaacatgcttaccgaaggctataaaaagcgatactcccaggtcagtgag
agctttcagaagagtgatcatccagccgtggtacgcagcaagcccagggtgccctctcca
ttcccgtgcacactccctccctcttccccttccaccattttcccaccatcctccacacct
aaccattgcctagaggctgatcaagagatggcaccagcaccttataatggttacatcatc
cctatccctgaccccaagcctgaagaagagtgccaggaagtcagtatgccaacagaaagc
ccctccagcagttctgtagggtctgaggcagagacagcatcactggaggctcccagtgca
gaacaagagtgcaatgatcaactgaaggaacactccaatactcctgacgcagaggagagc
ttcctgtaa

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