KEGG   Pangasianodon hypophthalmus (striped catfish): 113534228
Entry
113534228         CDS       T05759                                 
Symbol
smndc1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113534228 (smndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phyp03041]
    113534228 (smndc1)
Spliceosome [BR:phyp03041]
 Complex A
  U2 snRNP components
   U2 related factors
    113534228 (smndc1)
 Complex B
    113534228 (smndc1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    113534228 (smndc1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR T3SS_needle_F DUF2730 LMBR1
Other DBs
NCBI-GeneID: 113534228
NCBI-ProteinID: XP_026782690
LinkDB
Position
Unknown
AA seq 237 aa
MSDELVKQLSSYRAQLQQVEAALSTDPENEDLLKLQKDLQEVIELTKDLLTSQPAEGVAS
TNSSDAAPPKHSWKVGDRCMAMWSQDGQQYEAEIEEIDSENGTAAITFTGYGNAEVVPLH
ALKAAEQAKSSKEEGSRPKSKKELQAEQREYKKKKAQKKVQRMKELEQEREDQKSKWQQF
NNKAYSKNKKGQVKRSIFASPESVNGKVGVGTCGIADKPMTQYNDTSKYNVRHLMPQ
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtcggacgagttggtgaaacaactgagcagctacagagctcagctccagcaagtggaa
gcagcgctctctacagacccagaaaatgaagatctgctgaagttacagaaagacctgcag
gaggtgatcgagttgacaaaagacttgttgacgtctcagccagcagagggcgtagctagc
accaacagttcagatgccgcgccaccgaaacacagctggaaagtaggagatcgttgcatg
gctatgtggagccaggatggacagcagtacgaagcagagatagaggagatcgacagcgag
aacggcacagctgccatcaccttcaccggctatggcaatgccgaggtggtgcctctgcac
gcgctcaaagcagctgagcaggccaagagcagcaaggaggaaggaagcagacccaagtcc
aagaaggagctgcaggcagagcaaagggaatacaagaagaaaaaggcacagaagaaagtg
cagaggatgaaagagctggaacaagagagagaggaccagaaatccaaatggcagcagttc
aacaataaagcttattcaaagaacaagaagggtcaagtaaaacgcagtatattcgcctct
ccggagagcgtgaatggaaaagtcggtgtgggtacgtgtgggattgcagataaacccatg
actcaatataacgacacgtccaaatacaacgtgaggcatctgatgccacagtga

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