Pangasianodon hypophthalmus (striped catfish): 113535268
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Entry
113535268 CDS
T05759
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03440
Homologous recombination
phyp03460
Fanconi anemia pathway
phyp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
113535268 (brca1)
09124 Replication and repair
03440 Homologous recombination
113535268 (brca1)
03460 Fanconi anemia pathway
113535268 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phyp01009
]
113535268 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113535268 (brca1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113535268 (brca1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113535268 (brca1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113535268 (brca1)
Protein phosphatases and associated proteins [BR:
phyp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113535268 (brca1)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113535268 (brca1)
Multi subunit type E3
BRCC complex
113535268 (brca1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
113535268 (brca1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
113535268 (brca1)
BRCA1-A complex
113535268 (brca1)
BRCA1-B complex
113535268 (brca1)
BRCA1-C complex
113535268 (brca1)
BRCA complex
113535268 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
113535268 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
BRCT_2
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-Nse
zf-RING_5
RING_XB3-XBAT31
zf-RING_10
RTT107_BRCT_5
Zn_Ribbon_TF
TRAF3_RING
zf-RING_6
zf-RING_4
zf-MIZ
zf-ANAPC11
zf-rbx1
Sina_RING
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
113535268
NCBI-ProteinID:
XP_026784310
LinkDB
All DBs
Position
Unknown
AA seq
1352 aa
AA seq
DB search
MSAVKAEDVKRGIAVIWENLQCPICLDLMSEPVSTRCDHQFCKFCMTKLLERNKRKETSC
PVCKTKVTKRSLQESPGFQKLVEGLQNLVRSYEFDTRTNYLTGLPQRRQGASVETESRDQ
QGSGENTTSEGEVTEKEATLSSTAAAKDAFAKLMCFEDSCPATSEQDCLDSSPGDVPQKS
RINAADREEAPPRAEASDSQTQQDVTPDDGRRSRRRSKRLCLEPDRIMDKRQKKSVQKVS
EWLLKISPTSDTQTGSNTEGDLPNLTDSDAEKESTASRASTEINASAEDKADASPEREVP
CRGLEERVFGAVYKRERKVVKTTKVTKSFSPEREIAPVVPSGNLSEKDEKIKMPQRRSSR
KLTPADFIRKTSNEDKEDGVNQEEVDEGRKQENSSEPLKSSGEQEKVVQIGPDDENAENT
EESPAFEVPLKKQGRRSKMQEIWQDVDRDLTEKENNTDIKKDRKRRITRSSRDTAKSDDL
EKCKSAKYSKSLALVSAGTEIVDLRENVPGNPKLIEAEVNIESYPSSAEPKSPDARKTRR
SSRLQEFTAEVQGLPRRRRSKQALPKPADGPEHNTSTNLDEPRSAKTDHVGAGQPSQSEK
PERSVRRNGCVYNDDFENIEIVQSGEDAAAPKCVSEGTVTEEHSLVSVVPDTVDQDKHDI
PRSTKVANSTSPLAALVPESFPQKRQESPATKTLTPAVERRDTDQGEDTNDSELDTEQLM
KTFKATKRKSFYLGSPRTSHSRTQEKSLTQILEEEKQESVDQAQIPGISPDTDQVLPSNP
CELAPREITPQTSQSCIADCVASVSLLQVKSPALPSLPEDTQKDNSVKTSGASDHPEKVA
KSQDSSSSQDSRLPVNLECANSVQLFSTTVTQEEPQISHSEDSTKSPKSSEIQEKQSQAN
IDVDLNTISSIPLGNMTNSSVTPDGLVTNGPEALVMEPAATQNVDKMDEGEILSQPCLRR
KRKAQRLESTDSESSLEDDDLPPLAQIFKSHHSSSSSAKDPVMNSLNQDGLQAEERSPKP
GLDPVSQDSRSRSDPEAESSSASQSVAPYQKQQSPEDVNSNNVQDGGVPDSPGRDEWITS
SQGSVDLFGTPRESEEVVDGVCGNTGLSVESTQYSSEIITTQQRQEMQQELHRLERMMAL
VSEAIQKKDGDSDEKNKTEDCDQRSGQRGRVRSQVSVDTSTLTVVSEYQNGDLVCERTLK
YFQGIAGRKWVLSFLWISECFKHGKLLAEAPYEVCGDVVNGRDHNGPRKARTAPDDNLLM
KGCEICFQGSFTDMTTDQMEVMVELCGATVMKDPLMFSRKALRYQLVVVQPGPDDSQSYY
AALQRKATVVTRSWLLDSVATYTLQNPRDYKP
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcggtgaaggcagaagacgtgaagcgaggcatcgctgtgatttgggagaatctg
cagtgtcccatatgtctggatttgatgagcgaacccgtctcgacccgctgtgatcaccag
ttctgcaaattctgcatgaccaagctgctggaaaggaataagagaaaagagacgagctgc
cccgtgtgcaagacgaaggtcaccaagaggagtctgcaggaaagtccaggcttccagaaa
ctggtggaaggtctccagaatttagtccgttcttacgaatttgatacgcgcacaaactat
ttgactggattgccacagaggagacagggcgctagtgttgagacggagtcgagagatcag
cagggcagcggagagaacacgacctcagagggcgaagtgacggagaaagaagcgactctt
tcctccacagcagcagctaaagatgctttcgcaaaactcatgtgtttcgaggattcatgt
cctgccacttcagaacaggattgcttagacagcagtcctggagatgtgccacaaaaatcg
agaataaacgctgcagatcgtgaagaagctccaccgagagcagaagccagtgactcgcag
acgcagcaggatgtcactccagatgacgggagacgttcccgcaggagatctaaacgcctc
tgtttggagccagacagaattatggataaaagacagaagaagagtgtgcagaaggtgtcc
gagtggttgctgaagatttctccgacttctgacacacaaaccggaagcaacacggaagga
gatcttccgaatttgacagacagcgatgctgaaaaagagagtacagcttcacgtgcgtcg
acggagattaacgcttctgctgaagataaagctgacgcgagtccggaaagggaagtgcct
tgtcgaggtctggaagagcgagtgttcggagctgtgtataaacgcgagcgcaaagttgtc
aagaccaccaaagtcaccaaaagtttctctcctgaaagagagatcgcgcctgtcgttcca
tccggaaatttatcggaaaaggatgaaaagatcaagatgcctcagaggaggtcaagccgt
aagttgactccagctgactttatcaggaagacgtcaaatgaagataaagaagatggagtg
aatcaagaggaagttgatgaaggacgcaaacaagaaaacagcagcgagccgttaaagtcc
tcaggtgagcaggaaaaggtggtgcagattggtcctgatgatgaaaacgctgaaaataca
gaagaaagtccagcatttgaggtgccattgaagaaacaagggaggagatcaaagatgcag
gagatttggcaagatgtggatcgtgacttgacggagaaagaaaacaacacggacatcaag
aaagatcggaagagacggatcactaggagcagccgtgacactgcaaaatctgacgatttg
gaaaaatgcaaaagtgccaaatattccaagtcccttgctctagtcagtgctggaacggag
attgttgatttgagggagaacgttccgggtaatcccaaactaatcgaggcagaagttaat
attgaaagttaccctagtagcgcagagccgaagtctcctgatgctcggaaaaccagacga
agctcaaggctgcaggagttcaccgcggaagttcagggtcttccgagaagaagacggtct
aaacaagctcttccaaaacctgctgacggacctgaacataatacatccactaacctggat
gagccacgatcagcgaagactgatcatgttggtgcaggtcagccttcacagagtgagaaa
ccagaacggtctgtgaggagaaacggttgtgtttacaacgatgactttgaaaacattgaa
atcgtgcagtcaggcgaggatgcagctgctcctaagtgtgtatccgaggggactgtaact
gaagaacattcgctcgtttccgtcgtcccagacacggtggatcaagacaagcacgatatc
cctcgttctaccaaagttgcaaactcgacaagtccgttagcggctctggttccagaatcc
tttccacagaaacgtcaggaatcaccagctacaaaaacgctgacacctgctgtggagcgc
agagatacagaccaaggagaagacaccaatgatagtgaacttgacactgagcaactcatg
aagaccttcaaggccaccaagagaaaatccttctacctgggtagtcccaggacttcacac
tccagaacgcaagagaaatcccttactcagattttagaggaagagaagcaggagagcgta
gatcaagcacagataccaggcatctctccggacactgatcaagttctaccctcaaatcct
tgtgagctggcaccccgtgagatcacgccccaaacatctcaaagctgtattgcagattgt
gttgcaagtgtcagtctgcttcaggtgaaatcaccggctcttcccagtcttccagaagac
acccaaaaagacaattccgtaaaaacctcaggtgccagtgaccatcctgagaaggttgca
aagtctcaagattcctcaagttctcaagattccaggcttcctgtgaaccttgaatgtgca
aattccgtccagcttttctctacaaccgtgacccaagaggagccacaaatctctcacagc
gaagattcaacaaagtctccaaagtcttcagaaattcaagagaaacaatcgcaagcaaac
attgacgtagacttgaacacaatttccagcatcccgttgggaaacatgaccaactcgtcc
gtaacaccagatggccttgtaacaaatggtcctgaagctctggtcatggaacctgcagcc
actcagaacgtggataagatggatgaaggagaaattctttctcagccatgtttgcggagg
aagaggaaggcccagagactggagtctacagattccgaatccagtctggaggatgatgat
ttacccccactagcccagatatttaaatctcaccattcgtcctcatcgtctgccaaagat
ccagtgatgaactctttaaaccaagatggcctccaagctgaagaacgaagcccaaagcca
ggtttagaccctgtgagtcaggatagtcgctctcgcagtgacccagaagctgagtcaagt
tctgcaagccagagtgtcgctccttatcagaaacagcaatctcctgaagacgtaaactct
aataatgtacaagatggcggtgttcctgactcacctggcagagatgagtggattacttct
agtcaaggatctgtggatctttttgggacaccacgggaaagtgaagaagtggttgacggt
gtttgtggaaacacagggctttccgtcgagtcaactcagtactcgagcgagattattacc
actcagcagagacaggagatgcagcaggagctgcacaggctggagaggatgatggcgtta
gtgtctgaggcgatccagaagaaagacggcgactcggacgagaaaaataagacggaggac
tgcgaccagcgctcagggcagcgaggcagagtcagaagtcaagtctctgtagacacgtcg
acactgacagtggtatcggagtatcagaatggagacttggtgtgtgagcgaacgctgaag
tacttccagggcatcgctggcaggaagtgggtgttgagcttcctgtggatctcggagtgc
ttcaaacacggcaaacttctagctgaagctccgtatgaggtttgcggtgacgtcgttaac
ggacgcgaccacaacggaccccgaaaagcccgaaccgctccggatgataacctgctgatg
aaaggatgtgagatctgcttccagggctccttcactgacatgaccacagatcagatggag
gtcatggtggagctgtgtggtgctacggtcatgaaagatccgctgatgttctccagaaag
gctctccgttatcagctggtggtggttcagccaggccctgatgactctcagtcctactac
gcagctctgcagagaaaagccaccgtagtgactcggagctggctcttggattcagtcgcc
acgtacacgctccaaaatccacgtgattataaaccgtaa
DBGET
integrated database retrieval system
