Pangasianodon hypophthalmus (striped catfish): 113537808
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Entry
113537808 CDS
T05759
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3 isoform X1
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113537808 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
113537808 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113537808 (lsm3)
03041 Spliceosome [BR:
phyp03041
]
113537808 (lsm3)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113537808 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
113537808 (lsm3)
Spliceosome [BR:
phyp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
113537808 (lsm3)
Complex C
U2 snRNP components
113537808 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
113537808
NCBI-ProteinID:
XP_026788258
LinkDB
All DBs
Position
Unknown
AA seq
148 aa
AA seq
DB search
METYVTGTKKFSFFLSVHRCSAVGKISVLGHTASQLSLITPAITPASLVIWIKQQTTNTV
EEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEEI
YKSTKRNIPMLFVRGDGVVLVAPPLRVG
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atggaaacctatgtgacagggaccaaaaagttttctttttttctgagtgtacatagatgt
tcagcggtggggaaaataagtgtcctgggtcacacagcatcccagctctcactgataact
cctgcaataactcctgcatcacttgtaatttggataaagcaacagaccacgaacacggtc
gaggaacccctggatctcattcggttgagtctggatgagcggatttatgtgaaaatgcgg
aatgacagggagcttcgtggaagactacacgcttatgaccaacatttgaacatgatcctt
ggggatgtggaggagacagtgacaacagtggagattgatgaggagacgtatgaagaaatt
tacaagtcgacgaagaggaacattcccatgctgtttgtccgtggagatggagtcgtgcta
gtcgctccaccgctgagagtcggctaa
DBGET
integrated database retrieval system
