KEGG   Pangasianodon hypophthalmus (striped catfish): 113538922
Entry
113538922         CDS       T05759                                 
Symbol
cxcl12
Name
(RefSeq) stromal cell-derived factor 1 isoform X1
  KO
K10031  C-X-C motif chemokine 12
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04060  Cytokine-cytokine receptor interaction
phyp04672  Intestinal immune network for IgA production
phyp04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    113538922 (cxcl12)
 09140 Cellular Processes
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    113538922 (cxcl12)
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    113538922 (cxcl12)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:phyp04052]
    113538922 (cxcl12)
   00536 Glycosaminoglycan binding proteins [BR:phyp00536]
    113538922 (cxcl12)
Cytokines and neuropeptides [BR:phyp04052]
 Cytokines
  Chemokines
   113538922 (cxcl12)
Glycosaminoglycan binding proteins [BR:phyp00536]
 Heparan sulfate / Heparin
  Chemokines
   113538922 (cxcl12)
SSDB
Motif
Pfam: IL8
Other DBs
NCBI-GeneID: 113538922
NCBI-ProteinID: XP_026790177
LinkDB
Position
Unknown
AA seq 145 aa
MGCQEAVNHRVNAHSVGVKGQDRGVEGLWVSLTRARGRCSPQCGILQCGSLLHTQHGCES
DLSGSSGNGDYLWICFRRKPISLVERCWCRSTVTMVPQRNIRELKFVHTPNCSFQVIAKL
KNNKEVCLNPETKWLQQYLEKALEK
NT seq 438 nt   +upstreamnt  +downstreamnt
atgggatgccaggaggcggtaaatcacagagtgaacgcccactctgtcggtgtaaagggg
caggataggggtgtagaggggctatgggtgagtttaacacgcgcacgcggtcgctgctct
cctcagtgcgggattctgcagtgcggttctcttcttcacacgcaacatggatgtgagagt
gatcttagtggcagttctggtaacggtgactatctatggatctgtttcagacgcaagcct
atcagcctggtcgagaggtgttggtgccgttctacagtcaccatggtcccccagaggaac
atccgtgagctgaagttcgtccacacacccaactgttctttccaagtcattgccaaactg
aagaacaataaagaggtgtgcctcaatcctgagacaaaatggctacagcagtaccttgag
aaagcccttgaaaagtaa

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