KEGG   Pangasianodon hypophthalmus (striped catfish): 113539151
Entry
113539151         CDS       T05759                                 
Name
(RefSeq) lysine-specific demethylase 2A-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    113539151
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:phyp03000]
    113539151
   04121 Ubiquitin system [BR:phyp04121]
    113539151
   03036 Chromosome and associated proteins [BR:phyp03036]
    113539151
Enzymes [BR:phyp01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     113539151
Transcription factors [BR:phyp03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    113539151
Ubiquitin system [BR:phyp04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     113539151
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    113539151
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     113539151
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD JmjC F-box PHD Cupin_8 zf-RING_15 PPP4R2 LRR_4 Cupin_1 BUD22 Nop14
Other DBs
NCBI-GeneID: 113539151
NCBI-ProteinID: XP_026790525
LinkDB
Position
Unknown
AA seq 1311 aa
MEDRDEILTLVDGGVLRKRGRKRKRKKGDEDVTLKRSGTRRRYHDDGISDDEIEGKRTFD
LEEKVYSDRFGSDRIKRMEGKDFTFEFIQRGGLRDPIIFERPDGLGIKMPGSDFSVNDVK
MFVGSRRMIDVMDVATQKGTEMSMAQWRRYYETPPSQREKLYNVISLEFSHTKLENLVKR
PATVDMIDWVDNMWPRHLKERQRDSTNSILDMQYPKVQKYCLMSVQGCYTDFHIDFGGTS
VWYHILRGCKVFWLIPPTPQNLELYENWVLSGKQGDIFLGDKATECQRIELKQGYTFIIP
SGWIHAVYTTVDTLVFGGNFLHSFNIPMQLNISNIEDRTRVPAKFRYPFYYEMCWYVLER
YVYSLTNTSYLIPEFQKHSLGIGLKRESSSSEALNGHVKDEDDPPSPPTRPGMKVHMTPF
ELEGLWNLLGKLESLPSHKKCVPAGIHNAPALLHDMRALLKEHANDNPKLSYTGRPIVKW
PKRPSWYQPPPPPAPVGRPKLATTPIIPRPTKPASSMSALRRRRVRCKRCEACLRPECGE
CNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSAVCEICEEGNQDTGEELMECSNCAQIA
HPGCLKVPGEGVVNKDLPSCWECPKCVLGKDTDSESSGSGDDLTTQEGSGGLRGEGGAWH
GVGRPPSSLSHGSLRKQVAAPEQRLRKRIKLEGAKMHKRKSSSLDPRVAKIYRRHGMDSG
SDDEDGEGRRKISLHSRGAISARRGFGSGRRGLLRGSSHQGGRGSGGMTTNSSSMKMRRG
LGVRGERGGRVRLRGGSKMQRRRYETEDDDDDDDDDDEDDDDEEEEEDESEEERHMSRSE
KVHRLRRRRRRGEEDDEDDDEEDESEEQDFDGEDEEMEDLDDGGEEDEDDEGDNHSDSEP
DPPVLLVSDLNDELLNGSYLTVTLQRPSKAKRDPGSIVPKLEAAMSPRTPGNADLLQRRS
LHKYRQKNGSSLSTGNGLSQPKASLASGRHTRHRSLNLDGRASPSSTSSRSSISPPPPPL
TSTTGSSPPSLLTHPSFRDVGNEPGCEKEVWVSVFRYLSRTELAVCMRVCKAWYKWCYDK
RLWTRIDLSRCRSLSAQALSAIIKRQPVTLDLSWTPVSKKQITWLTHHLPGLKDLIMSGC
SSSSFSGLSSQSIPCLRTLDLCWAENIKDSQLKDLITPSGSENRSRLKGLLTLRLAGLDV
SDSTLKLIIKHMPLLRRLDLSHCPVLTDQSISLLTAIGSNTRSTLREVNLAGCNKLTDVC
LNYMKRLSALTLLDLRGCKGITRHGCENFISDLSYCTFFCLTEDKLIQRIS
NT seq 3936 nt   +upstreamnt  +downstreamnt
atggaggacagagatgagatacttacccttgtagatggtggtgtgttgaggaagcgaggg
aggaagaggaaaagaaagaagggggacgaagatgtgacactgaagcggtcaggcacgcgg
cgacgttaccatgacgatgggatctctgatgatgagatcgaggggaaaaggacctttgac
ctggaggagaaagtatacagtgatcgctttggttctgacagaatcaaacgcatggaagga
aaagatttcacgtttgagttcatccagagaggcgggctgagggatccaattatctttgaa
cgaccagatggacttggaatcaaaatgccaggttcagacttcagtgtgaatgatgtgaag
atgtttgtgggcagtcggcgaatgattgacgtgatggatgtggcgactcagaagggcaca
gagatgtctatggctcagtggaggcgatactatgagactccaccttcccagagagagaag
ctgtacaatgtcatcagcttggagtttagccacaccaaactggagaatttagtcaaacga
cctgcaacggtggacatgatagattgggtggataatatgtggccacggcacttaaaggaa
aggcaaagagactccaccaactccatccttgacatgcagtacccgaaagtgcagaaatac
tgtctgatgagcgtgcagggctgttacacagacttccacatagactttggaggcacgtct
gtgtggtaccacatactgcgaggatgcaaggtattttggttgattcctccgacaccacag
aacctggagctctatgagaactgggtgttgtctggaaaacaaggagacatcttccttgga
gacaaggctacagagtgccaacggattgagctcaagcagggctacacatttattatcccc
tcaggttggattcatgctgtgtacacgacagtggacacacttgtatttggtggaaatttc
ctacacagttttaacatccccatgcagctcaatatctccaacattgaggacaggacacgg
gtgccagctaaatttcgctacccattttattatgagatgtgttggtatgtgctggaacgg
tatgtgtacagtctgaccaacacctcctacctcatccctgagtttcagaaacactctcta
ggcatcggacttaagcgagaatcctccagttctgaagccttgaatggtcatgtaaaggac
gaagatgatcctccctctcctccaactcggccagggatgaaagttcacatgacacctttt
gagctggagggtttatggaatttgctaggaaagctagaatctcttccctcacacaaaaag
tgtgttcctgcaggaatacataatgcacctgccttgctccatgacatgcgggcattactt
aaagaacatgctaatgataaccctaaactttcatacactggaagacccattgttaaatgg
ccaaagaggccatcctggtaccagcctcccccaccccctgccccagtaggtcgtcccaaa
ttagccaccactccaatcatccctcgtccaacaaagccagcctcctcaatgtcagcgctg
cggcggaggcgtgtgcgctgtaagcgctgtgaggcgtgtctgcggccagaatgtggcgag
tgcaatttctgcagagatatgaagaagtttggtggccctggcaaactgaaacagacatgt
gtccttcgccagtgtcttgctcctggcttgcctctctctgcggtgtgtgaaatttgtgaa
gaagggaaccaggatactggagaagaactcatggaatgctccaattgcgcgcagattgcc
catcctggctgcctaaaggtgccaggtgagggtgtagtaaacaaagatctgcccagttgc
tgggaatgtcccaaatgtgtcttgggcaaagacacagactctgagtcgtcgggcagcggt
gatgacctcacgactcaggaggggtcgggggggctgaggggcgagggcggggcgtggcac
ggggtcgggcggcccccttcctctctatcacatgggtcgctacggaaacaagtggcggcc
ccagagcagcggctcaggaagaggatcaaattggaaggagccaaaatgcataaacgcaag
tcatcctcgctagatcctcgtgtggctaaaatctaccgccgacatggaatggattcaggc
agtgatgacgaggatggagaaggaaggagaaagatctcacttcactcaaggggtgcaata
tctgctcgccgtggatttgggtctggtaggcggggcctgttaagaggctcatcacatcaa
gggggcagagggagtggtggcatgaccacaaattcctcctccatgaaaatgaggcgtgga
cttggtgtaaggggtgagcgcggaggtcgcgttcgcttacgaggtgggtccaaaatgcag
cgaaggcgttatgaaacagaggatgatgacgatgacgacgacgatgatgatgaggatgat
gatgatgaggaggaggaagaggatgaaagtgaagaagaaaggcatatgagcaggtctgaa
aaagttcaccgtttacggcgtcggcggcgcagaggtgaagaggacgacgaagacgatgat
gaggaggatgaaagtgaagaacaagactttgatggagaggatgaggagatggaggacctg
gatgatggaggggaggaagatgaggatgatgaaggtgacaaccattcagactcggaacct
gaccctcctgttctgcttgtctcagacttaaatgacgaacttttaaatggttcttacctg
actgtcacgttgcagcgcccatcaaaggctaaacgtgatcctgggtctattgtacccaaa
ctggaggcagccatgtctcctcgcactcctggtaatgctgatttactccagcgcagatcc
cttcacaagtatcgccagaaaaatggcagctctctctccactggaaatggtctttcacaa
cccaaagccagtctagcatcaggccgtcatacacgccacaggagtttgaaccttgatggt
agagcctcaccttcctccacttcctctcgctcttccatttctcctcctcctcctcccctg
acatccaccaccggctcctcccctccttccctcctcactcatccctcgttccgggatgtg
gggaacgaaccaggctgtgagaaggaggtgtgggtgtcagtgtttcgctacctgagccga
acagaactggctgtgtgcatgcgggtttgcaaggcctggtacaaatggtgttacgataaa
cgcttgtggactcggatagatctcagtagatgtcgctccctcagtgctcaggctctgtca
gctattattaaacgccagcctgtcacacttgacctgtcctggacacccgtgtccaagaaa
cagatcacctggcttacccatcatcttccaggactgaaggatctgatcatgtcaggctgt
tcatcatcatctttttcgggcttgagttctcagagcataccttgtctccgcacactggac
ctgtgctgggccgagaacattaaagactctcagctcaaagacctcatcactccatcaggt
agtgaaaatcgcagcaggctgaaaggcttgttaactttgcggttagctggtctggatgtg
agtgactcgacactgaagctgataatcaaacacatgccgttgctgaggaggttagacctg
tcacattgccctgtccttacagatcagtccatcagcctgcttacagccattggctcgaac
acacgcagcactctcagagaggtcaaccttgcaggttgtaataagctaacagatgtctgc
ctgaattatatgaagcgcctctcagctctaacactactggacttgcggggctgtaagggt
atcacgcgacatggctgtgaaaacttcatttctgacctttcctactgcaccttcttctgt
ctgactgaggataaactcatccagaggatatcttaa

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