Pangasianodon hypophthalmus (striped catfish): 113540252
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Entry
113540252 CDS
T05759
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113540252 (smchd1)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113540252 (smchd1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
113540252 (smchd1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
113540252 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_8th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
Ig_SMCHD1_5th
HATPase_c_3
SMC_hinge
HATPase_c
Cyc-maltodext_C
jr-ZPR1
Motif
Other DBs
NCBI-GeneID:
113540252
NCBI-ProteinID:
XP_026792433
LinkDB
All DBs
Position
Unknown
AA seq
1982 aa
AA seq
DB search
MAESGVPPAEASHGSRSVCVFDCRPQSKQAAEKMLDISAMSYKQFLCAVRKEFSISVNES
FVITTTDRREIDSDVFNEIPDGRTLHLLQSVDQELAVATEERIMYVPHFHTIVQSGQYEY
YASEGQKALPYAFAELIDNALSATSHNPGTRSIDIRLFFDESQGGPAVVVMDNGRGMTSK
ELNNWAVYRLSKFNRDDRIFRSDESGYVRPSAVPRSLNSDISYFGVGGKQAVFYIGQSVR
IISKPVGSPDVHEFVMSKEDFEQKEKNNKEIYSGIIRNRKPGDDSHVRVDEERFLQTLFL
EEKGKESFTTIVITAVQPEHVTYLKQDFVSWTRELVHIYHYYVHGIHGNDTRHIQTPETV
SNIDIQICLIDRHTRVPRVLNLKDIDNDMQTLYIKSSVAEFEFNASKDGDAKVEGLLRYH
PFLYDRETYPEDPYAPAPEPDEDCFISHAEGRGKRPIFECFWNGRLIPYSSVDEFDWCAR
PKKIGSVPLECYNRISGVLFTNDRFQVSTNKLTFMDLELQLRDKNTIFTRVINGQEQRVK
INREFTNWLKECHEKYDKQVRFLGFQGVMTRTDVQPKRLQSPWAQYKAIVWDGKTYKTGQ
QVKTMKTQPILYGTVVQFLLYGDHEDDVYATGGHVQIALEPKEVYNEVRIIPITKIDRQA
TAADIKESIENELDKLPNKLRVAWPEGNPWPDKAIQPAGTPMGPIQVEILNKKGETMSRL
PVNSKKLQIELKVVWHSPNGDIKTNCHTGVNAKWHYWFRKMENFNKLGTYTLHLQTILSD
GDSPTNEWAGRRLPHYTLNFSIKESSAAAFVVGVVPSPVQVGVPFALPLQFADAFNHPTQ
PPSGIKPQLECSSLKLSYEQTTSSGTTFTIQDLRAMGKVTNHQDRIHTVKVTIPNLNPDS
QSFQISVRPGPPHQLVVKPKDEVCIENGTPAGFRVEVQDEFHNITTHSKLIVRCQLFGAS
DLPADTVDCSNTGSGLLLAKPIQLKNVTTERILTAKFGIPNQKAVACVERTVRILPSTRV
FRIEIYRQEDDSDDVMVLQNKERINWTAGDTLGSLRFRLYDEGGRQVALTQRLAHNIKVN
WAADIKAAELAKGRLPCVCVPTKAHGEQFYQVSFQDQHTVDTSFTIVPRPDEPDRLRVTL
SETTVRMGETLSGNIYVEVIDQYGNKTDALSAESMKAVSVSADNLDESALNFDWQTSTGT
MVVTGVRFVEGLPGPRELCFKYQNFEEFVRVKVTAGPPAKITLLDAPELPLHVVNGQGLN
TPFVLQLCDEWGNPVPDQRVVIAMKTLSPQLKIKSSVMSQPVNTEGKASFILETITATIG
EHELEFRGSFSRSNTISGPVVKLCVMPDPNNPVRLSVEYDSEAILRAGDTFPVFKVTVLS
EEGGPVKNVSPSSLSMLLWQGVASGSRPPPEAMALKCSKPKDKENDDHFYFRDKEIPVRV
GKYMVQFFFAVEKSKSLWSSQIALNIVANKPVKLVPDTPNSTPVVSNSSTLADRTLLEML
SLKIMDEHNNPAGMGINGKVILTVTTADGDDAEDLPMFENKAKSLKYDLINGETLITDLA
LMENSPGTDGAVYVLQFRPVLEGPKSKAIIPPFNLPFRFYNDAENQKVMAAMSKKKDQLS
RSIEVYKEILETNKQLTSELTGQVQDASSKESQLKVEIRKTGIDISKLTDVTSIEGLVAQ
MTADLERLQNLPRRKCTMPDPFRGSQDVLGKIAHLALVKDDDAAKVISWHLLGDMDCVVT
VTTAAAKKIYDETQGRQQVMPLETIFWKPNSRPLPHIRNGQSLFRPLGNPVFVRDLLIFP
EHAESCNMVFSILLGDTILVDDLDSANHYRKGVVQSKVQCPTLLTRQGERIRSNGKFGGL
QNKAPPIEKLRGHVFGAPLPQDYYTICKQKELLQQYSVAVQNALKVKADYDYHVEYLQSP
KMKLTQQELQQQEKELRDIEKKLTSTPVRTSPGSVKRNLQDEVDESLPAKRIRRKTRKLL
DS
NT seq
5949 nt
NT seq
+upstream
nt +downstream
nt
atggcggagtcgggagttcccccagccgaggcttcgcatggcagccggtcggtttgtgtc
tttgactgtcgccctcagagtaaacaggctgctgaaaagatgttggatatcagcgccatg
agctacaaacagttcctgtgtgctgtgcgcaaggaattttctatctcggtaaatgaaagt
tttgtgatcactacgacagatcgcagggagatcgattcagatgttttcaatgaaatacca
gatggaagaactttacacttgctacagtctgtggatcaggagttggctgtggcaactgaa
gaacgaattatgtacgttccgcatttccacaccattgtacagagtggccagtatgagtac
tatgccagcgaaggacagaaggcactaccctacgcctttgctgagcttattgataatgca
ctttctgcaacctcacataatcctggaaccaggagcatcgacataagattgttttttgat
gagtctcaaggtgggccggcagtagtagtgatggataatggtcgtggaatgacctctaaa
gagttaaataactgggcggtttatcgcctttccaaattcaatcgagatgaccgcattttt
aggagtgatgaatcaggatatgtccgtcccagtgcagttcctcgcagtctgaacagtgac
atctcctactttggcgttggaggcaaacaggctgtgttttatataggccagtctgtacgg
atcataagtaagccagttggttctccagatgtacatgagtttgtcatgtctaaagaagac
tttgaacagaaggagaaaaacaacaaagaaatttattctggtatcatccgaaacaggaag
ccaggagatgactctcatgtgagagtggatgaggagcgtttcttgcaaactctgtttctg
gaagagaaaggcaaggaaagttttaccactatagtcataactgcagtccagccagaacat
gttacctacctaaagcaggatttcgtctcatggaccagagagctggtgcacatctatcat
tactatgttcatggtatacatggaaatgacacaagacacatacaaactcctgaaactgtg
tcaaacattgacatccagatctgtctaattgatcggcacactcgcgtgccaagggtactt
aatctaaaagacatagacaatgacatgcagactctttatataaaatccagtgtggcagag
tttgagtttaatgccagcaaagatggagatgccaaagtagagggcctgcttaggtatcat
ccattcctgtacgatagagaaacctatccagaggacccatatgcaccagctccagagcct
gacgaagactgttttatttcacatgctgagggccgagggaaaagacccatctttgaatgc
ttttggaatggacgactaattccttattcttctgttgatgagtttgattggtgtgcaaga
cccaagaaaatcggttcagtaccattagaatgttataacaggatctcgggcgttctcttc
actaatgaccgttttcaagtcagcaccaacaaactcacatttatggatctggaattacag
ctgcgtgacaaaaatactatctttacaagagtaatcaatggtcaggagcaaagagtgaag
atcaaccgagagttcacaaattggttgaaagagtgccatgaaaaatatgataaacaggtg
aggttccttggtttccaaggtgtaatgactcgcacagatgtgcaacctaaacgcctgcag
tcaccatgggctcagtacaaagccatcgtgtgggatggtaaaacctacaaaactggacag
caggtgaaaacaatgaaaactcagcctattctttatggcacagtagttcagtttttgctc
tatggggaccatgaagatgatgtctatgccaccgggggtcatgttcaaattgcactggaa
cctaaggaggtgtacaatgaggtcaggatcatccccattactaagattgacagacaggct
acagctgctgacatcaaggaaagcattgagaatgaactggacaaacttcctaataagttg
agagtcgcatggccagagggaaacccatggcctgacaaagctattcaaccagctgggact
cccatgggtccaatccaagttgagattttgaataaaaaaggggagacaatgtcacggttg
cctgttaattccaagaaattgcagattgaactcaaggtggtctggcactctcctaacggg
gatatcaaaaccaactgtcacactggcgtgaacgctaagtggcattactggttcagaaaa
atggaaaattttaataagctggggacatacacacttcatctgcaaacaatactgagtgat
ggtgattccccaacgaacgagtgggctggaagacgactgcctcattatacactcaacttc
agtattaaagaaagcagtgcagcagcttttgtggtgggtgttgttccttctcctgttcaa
gtgggggtaccctttgcgttgcccctgcaatttgcagatgcatttaatcatccaactcag
ccaccttctggcatcaaaccccagctagagtgcagttcattgaaactgagctatgaacag
acaacttcaagtggaactactttcaccatacaagacctgagagccatgggtaaagtaacc
aaccatcaggacaggatacacactgtaaaggtaacgatcccaaacctcaacccagactcc
cagtctttccagattagtgttcgtccaggccctccacatcagctggtggtgaagcctaaa
gatgaagtttgcatagagaatggcacaccagcaggattcagagtagaagttcaggatgag
ttccataatatcacaacgcattccaaacttattgtccgctgccagttattcggagcctct
gatttgccagctgacactgttgactgcagtaatactggttctggtttgctgctagcaaaa
ccaatacaactgaagaacgtcacaacagagcgtatcctcactgcaaaatttggcattcct
aatcagaaggctgtggcttgtgtggagagaacagttcgtatcttgccaagcacccgcgtc
ttccgtatagagatctacagacaagaggatgattcggatgatgtcatggtgcttcagaat
aaggagcgtattaactggacggcaggtgacacactcgggagtctgcgctttagactttat
gatgaggggggcaggcaggtggctttaacacagagacttgcccataacataaaggtgaac
tgggctgcagatattaaagctgcagaattggcaaagggaagactaccatgtgtgtgtgtc
cccacaaaagcacatggagaacaattttatcaggtgtcatttcaggatcagcacacggtt
gacacatcctttactatagtcccacgaccggatgagcctgaccgcttgagggtcactctc
agtgagacaactgtcaggatgggagaaactctgtctggaaatatttatgttgaggtgatt
gatcagtatggcaataagacagatgctctaagtgctgagagcatgaaggcagtcagtgtg
tctgcagataaccttgatgaatcagccctgaatttcgactggcagaccagtacagggaca
atggtggtgactggcgtccgctttgtcgaaggcttacctggtccaagggagttgtgtttt
aagtaccagaattttgaggagtttgtcagagtaaaagtcactgctggaccaccggcaaaa
atcactctgctggacgctccagaactgcccttacatgttgtaaatggacaaggattgaac
actccattcgtgctacagttatgtgatgagtggggaaatcctgttccagatcagcgtgtt
gtcatagcaatgaaaactctgtcaccacagcttaagattaaatcatcggtgatgtcccag
cctgtgaatacagaaggaaaggccagctttatactggagaccataacagcgacaatagga
gagcatgagctggagttccgaggatcctttagtagaagcaatactatttctggcccagtt
gtgaagctgtgtgtgatgcctgatcccaacaaccctgttaggcttagtgtagaatacgac
agtgaagccatcttaagagcaggagatacattccctgtgttcaaagtaactgtactctct
gaagagggtggacctgtgaagaatgtgagtccatccagtctgtccatgctgctgtggcaa
ggcgtggcttcaggatcccgccctccacctgaggcaatggcacttaaatgtagtaaaccc
aaggacaaggaaaatgatgaccacttttacttcagagataaagagattcctgtcagagtg
ggaaagtacatggtgcagtttttttttgctgtagaaaaaagcaagtccctctggagcagt
cagattgctctgaacattgttgcgaataaaccagtgaaactcgtcccagacactcccaat
tcaactcctgtggtctccaacagcagcactctagccgatcgaactcttcttgaaatgcta
tccttgaagattatggatgagcacaataacccagctggtatggggattaatggaaaggtg
attctgactgtgacaactgctgatggtgatgatgcagaagatcttcctatgtttgagaac
aaggccaagagtctaaaatacgatcttattaatggagagactcttatcactgacttagca
cttatggagaatagtccagggactgatggagccgtgtacgttctccagttccgtccagtg
cttgaaggccctaaatctaaggccatcatccctccttttaatttgcccttcaggttctac
aacgatgcagagaaccagaaagttatggctgctatgagtaagaagaaagaccagctgtct
cgatctattgaagtctacaaagaaattttggagacaaacaaacaactcacatctgaactc
acgggtcaagtgcaagatgcatctagcaaagagtctcagctgaaagtggagatcaggaaa
actggcatagatatttcaaaattaactgatgtgacgtcaattgagggtttagttgcgcag
atgactgcagatttggagaggctacagaatctgccccgtcgaaaatgtaccatgcctgat
ccattcagaggcagccaagatgtcctaggaaagatagcacacctggcactggtgaaggat
gatgatgcagcaaaggtcatttcctggcatcttcttggtgacatggactgtgtggttacc
gtgacaacagctgcagcaaaaaaaatctatgatgaaacgcaaggacggcaacaagtcatg
cccctagagacaattttctggaaaccaaatagcaggccattgccccacatcaggaatggt
caaagtttgttccgtccattaggaaaccctgtgtttgtcagagatctgctcatttttcct
gagcatgcagaaagctgcaacatggtcttctcgattcttcttggagacaccatattagtg
gacgatttggattccgctaaccattaccgcaagggggttgtccagagtaaggtgcagtgc
cctactctgctgacacggcaaggggagcgtatccgtagcaacgggaagtttggtggttta
caaaacaaggctccaccaatagagaagttgagaggacatgtgtttggagcgccactgcct
caagattattacaccatctgcaagcagaaggagttgctgcagcagtactctgtagcagta
caaaatgcattgaaggtcaaggctgattacgactaccatgtggagtatctgcagagtcct
aagatgaaactgacgcagcaggagctccaacagcaagagaaggagctcagagacatcgag
aaaaaacttaccagcactcctgtacgcacttctcccggttcagtaaaacgaaaccttcaa
gacgaggttgatgagtcccttccggcaaaaaggattcgacgtaaaacccgcaaactactg
gattcttaa
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