Pseudoalteromonas issachenkonii: PI2015_1898
Help
Entry
PI2015_1898 CDS
T04164
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pia
Pseudoalteromonas issachenkonii
Pathway
pia03030
DNA replication
pia03410
Base excision repair
pia03420
Nucleotide excision repair
pia03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PI2015_1898
03410 Base excision repair
PI2015_1898
03420 Nucleotide excision repair
PI2015_1898
03430 Mismatch repair
PI2015_1898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pia03032
]
PI2015_1898
03400 DNA repair and recombination proteins [BR:
pia03400
]
PI2015_1898
Enzymes [BR:
pia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PI2015_1898
DNA replication proteins [BR:
pia03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PI2015_1898
DNA repair and recombination proteins [BR:
pia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PI2015_1898
NER (nucleotide excision repair)
GGR (global genome repair) factors
PI2015_1898
MMR (mismatch excision repair)
DNA ligase
PI2015_1898
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PI2015_1898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ALQ55183
LinkDB
All DBs
Position
I:complement(2123599..2125620)
Genome browser
AA seq
673 aa
AA seq
DB search
MTSSISEQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTADSPT
QKVGGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTEELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGEVFMDSA
GFEKLNAEAEKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGTLPEDH
YQQLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNKKALQER
LGFVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NADEIARLGVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEIVFPTMCPICDSHIERVE
GEAVARCTGGLVCQAQRKQAIKHFASRKALDIDGFGDKIVDQLVDRELIKTPADLFILKQ
GHFESLERMGPKSAKNLVAALDDAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLENVI
DASIEQLIEVSDVGEIVAKHVRGFFTEEHNLTVVNELIAQGINWPQLTAPSEQEQPLAGL
TYVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILT
EDDLITLLETHNG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcagcattagtgagcaaattaatcatcttcgtaccacgcttgagcaacacaat
tatagttattatgtgcttgatacacccagcatacctgatgccgaatatgaccgcttgtta
cggacactaagtgaattagaaacccagcaccctgagtttttaacagccgattcacccact
caaaaagttggaggagcggcgcttgccaagtttgagcaagtagcgcaccaagtgcctatg
ttatcgcttgataacgcctttggtgaggatgaatttagcggttttaatcgtcgtattaaa
gagcgcttaatgagcactgaagagcttacattttgctgtgagcctaaactggatggttta
gcggtatcgattatttatcgcgatggagtactggttcaagcggcgacccgtggcgatggt
tttactggcgaaaatattactcaaaatgtaaaaacaatccgtaatgtgccattaaaattg
cgcggtgatgattaccctcgtgaacttgaagtgcgcggtgaggtatttatggatagcgcg
ggctttgaaaaattaaatgcagaggcagaaaaacgtggcgataaagtctttgttaatcca
cgtaatgcggcggcaggaagtttacgccagctcgactcaaaaattaccgcaaaacgccca
ttgatgttttatgcctacagcaccggattagttgccgatggcaccttacctgaagatcac
taccagcaacttgctaagcttaccgattggggattaccgctgtgtccagaaaccaaatta
gttgaaggcccaaaggctgcgcttgcctattacaatgatattttaacgcgtcgtagcgag
ctaaagtacgaaatagatggcgtggtaataaaggtaaataaaaaagccttacaagagcgc
ttaggctttgtagctcgtgcaccgcgttgggcaatcgcttataaatttccggcgcaagaa
gaaataacgcaattattagatgttgaatttcaagtagggcgtacaggggcaattacaccc
gtagcaagactagaaccagtatttgttgggggtgttacggtatcaaatgcaacgctgcat
aatgccgacgaaatagctcgtttaggcgttaaagtgggcgacaccgtgattattcgccgc
gcaggggatgttatcccgcaaattactcaagtggtacttgagcaacgcccaagcgatgca
aaagaaattgtctttccaactatgtgccccatttgtgactcgcatattgaacgggttgaa
ggtgaagccgttgcacgttgtaccggtggcttagtatgccaagcacaacgtaaacaagcg
attaagcattttgcatcgcgtaaggcattagatattgacggctttggcgacaaaattgtt
gatcaattagttgaccgagagctgatcaaaaccccggctgatttatttattttaaagcag
ggacattttgaatcacttgaacgaatggggccaaaatcagcaaaaaacttagttgccgca
cttgatgatgcaaaaacgactaccttagcaaagtttttatattcactgggtatccgtgaa
gtcggtgaggcaaccgcgcaaaacttagctaatcattttttaacgcttgaaaacgtaatc
gatgccagcattgaacagctgattgaagtaagcgatgtaggtgaaatagtggcaaagcac
gtgcgtggcttttttactgaagagcataatttaaccgtggtgaacgaattaatagcccaa
ggcattaactggccacagttaacagcgccatcagagcaagaacaaccgctagcgggttta
acttatgtgctaactgggacgcttaatacgcttaatcgcaatgatgcgaaagcgcgctta
caacaattaggtgccaaggtatctggcagtgtttcagccaaaacggatgcgctagtggcg
ggcgaaaaagccggctctaaactaactaaagcgcaagaactcggtatagaaatactgaca
gaggatgatttaattactttgttagagactcataatggctag
DBGET
integrated database retrieval system
